View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_334 (Length: 245)

Name: NF9839A_low_334
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_334
NF9839A_low_334
[»] chr7 (7 HSPs)
chr7 (1-178)||(43942296-43942472)
chr7 (1-178)||(41678310-41678487)
chr7 (1-150)||(17364168-17364317)
chr7 (24-177)||(25806514-25806667)
chr7 (132-175)||(17513320-17513363)
chr7 (132-175)||(17539851-17539894)
chr7 (67-168)||(22708092-22708193)
[»] chr1 (6 HSPs)
chr1 (1-178)||(26473902-26474079)
chr1 (1-175)||(20569781-20569955)
chr1 (1-178)||(27301309-27301485)
chr1 (67-172)||(8697801-8697906)
chr1 (192-231)||(19670955-19670994)
chr1 (132-175)||(20573702-20573745)
[»] chr6 (3 HSPs)
chr6 (1-178)||(24497659-24497836)
chr6 (118-178)||(9290057-9290117)
chr6 (42-145)||(12313459-12313562)
[»] chr5 (8 HSPs)
chr5 (1-178)||(25073662-25073839)
chr5 (1-178)||(25131633-25131810)
chr5 (4-178)||(40690819-40690993)
chr5 (1-178)||(26701272-26701448)
chr5 (1-178)||(26971005-26971181)
chr5 (1-178)||(41309931-41310108)
chr5 (1-178)||(19546089-19546265)
chr5 (93-172)||(34271461-34271540)
[»] chr8 (2 HSPs)
chr8 (1-178)||(18558763-18558940)
chr8 (1-178)||(5660799-5660976)
[»] chr2 (1 HSPs)
chr2 (1-178)||(26223696-26223873)
[»] scaffold0074 (1 HSPs)
scaffold0074 (67-172)||(20474-20579)
[»] scaffold0028 (1 HSPs)
scaffold0028 (67-172)||(18085-18190)
[»] chr4 (1 HSPs)
chr4 (67-172)||(5879011-5879116)
[»] chr3 (1 HSPs)
chr3 (76-170)||(2693278-2693372)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 43942296 - 43942472
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |    
T  43942296 aaataactgtcactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactgccactttaaaccttgtggcaggcaaaatatcggcagt 43942395  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43942396 ttttaaaacgccagaattgtgcatagtggcggctaaaactgccggaacataca-tttttagccgccgaaaaacacgcg 43942472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 41678487 - 41678310
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| || | | |    
T  41678487 aaataaccgccactttaagc-aagtataaaacggcggataacatggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggtagt 41678389  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacatt-ttttagccgccggaaaacacgcg 178  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  41678388 ttttaaaacgccagaattgtgtatagtggcggctaaaaccgccggaacatacatttttttagctgccggaaaacacgcg 41678310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 17364317 - 17364168
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||| |||||| ||||||||| || ||| |    
T  17364317 aaataaccgccactttaagccaaatataaaacggcggacaacatggcggttacgtaaaaactgccgctttaaacattgtggtaggcaaaatttcggcagt 17364218  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacat 150  Q
    |||||||||||||||||||| ||||||||| |||||||  ||||||||||    
T  17364217 ttttaaaacgccagaattgtacatagtggcggctaaaatcgccggaacat 17364168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 25806667 - 25806514
Alignment:
Q  24 gtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgca 123  Q
    ||||||||||||||  | |||||||||||| ||||||||||| ||  |||| ||||||||| |||||| ||  || || | ||||| |||||||||||||    
T  25806667 gtataaaacggcggctaccatggcggctacctaaaaactaccgctgcaaacgttgtggcagacaaaatttccacagttataaaaacaccagaattgtgca 25806568  T
Q  124 tagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgc 177  Q
    ||| ||| |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  25806567 tagcggcggctaaaaccgccggaacatacattttttagccgtcagaaaaaacgc 25806514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 17513320 - 17513363
Alignment:
Q  132 gctaaaactgccggaacatacattttttagccgccggaaaacac 175  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  17513320 gctaaaaccgccggaacatacattttttagccgccggaaaacac 17513363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 17539894 - 17539851
Alignment:
Q  132 gctaaaactgccggaacatacattttttagccgccggaaaacac 175  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  17539894 gctaaaaccgccggaacatacattttttagccgccggaaaacac 17539851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 22708193 - 22708092
Alignment:
Q  67 ctttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgcc 166  Q
    |||||||| ||||||||| ||||||  | ||| |||| ||| |||||||||||||||||| ||| | |||||| ||| |||||| ||  ||||||| |||    
T  22708193 ctttaaactttgtggcagacaaaattccggcagttttgaaaccgccagaattgtgcatagcggcggttaaaaccgccagaacattcaaattttagctgcc 22708094  T
Q  167 gg 168  Q
    ||    
T  22708093 gg 22708092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26473902 - 26474079
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |    
T  26473902 aaataaccgccactttaagccaagtataaaatggcggacaacatggcggctacgtaaaaactgccactttaaaccttgtagcaggcaaaatatcggcagt 26474001  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26474002 ttttaaaacgccagaattgtgcatagtggcggctaaaactgccggaacatacattttttagccgctggaaaacacgcg 26474079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 20569955 - 20569781
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||| || |||||    
T  20569955 aaataaccgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaaatgccgctttaaacattgtggcaggcaaaatttcggcaat 20569856  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacac 175  Q
    |||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  20569855 ttttaaaacgccagaattatacatagtggcggctaaaaccgccggaacatacattttttagccgcgggaaaacac 20569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27301485 - 27301309
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||| || || |     
T  27301485 aaataaccgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactgctgctttaaacattgtggcaggcaaaatttcggc-ag 27301387  T
Q  101 ttttaaaacgccagaattgtgcat-agtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||| ||||||| |||| | ||||| || | ||||||||| ||||||||||||||||||||||||||    
T  27301386 ttttaaaacgccagaa-tgtgcataagtgacggctaataccgtcggaacatatattttttagccgccggaaaacacgcg 27301309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 8697801 - 8697906
Alignment:
Q  67 ctttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgcc 166  Q
    |||||||| |||||| || |||||| || ||| |||| ||| |||||||| ||| ||||| ||| ||||||||||||||||||| ||  |||||||||||    
T  8697801 ctttaaactttgtggtagacaaaatttcggcagttttgaaaccgccagaaatgtacatagcggcggctaaaactgccggaacatccaaattttagccgcc 8697900  T
Q  167 ggaaaa 172  Q
    ||||||    
T  8697901 ggaaaa 8697906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 19670994 - 19670955
Alignment:
Q  192 atttagtatattcgccagaatttgtagtagtgatgtccat 231  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19670994 atttagtatattcgccagaatttgtagtagtgatgtccat 19670955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 20573745 - 20573702
Alignment:
Q  132 gctaaaactgccggaacatacattttttagccgccggaaaacac 175  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  20573745 gctaaaactgccagaacatacattttttagccgccggaaaacac 20573702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 24497836 - 24497659
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| || ||| |    
T  24497836 aaataaccgtcactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagt 24497737  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  24497736 ttttaaaacgccagaattgtgcatagtggcggctaaaaccgccggaacatacattttttagccgccgaaaaacacgcg 24497659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 9290057 - 9290117
Alignment:
Q  118 tgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  9290057 tgtgcatagtggcggctaaaaccgccggaacatacattttttagccgccggaaaacacgcg 9290117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 12313562 - 12313459
Alignment:
Q  42 catggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactg 141  Q
    ||||| |||| | |||||||||||  ||||||| |||||| || |||||| || ||||||||| |||||||| ||||||||||| || | |||||||| |    
T  12313562 catgggggctgcctaaaaactaccgatttaaactttgtggtagacaaaatttcggcaatttttgaaacgccaaaattgtgcatactgacggctaaaaccg 12313463  T
Q  142 ccgg 145  Q
    ||||    
T  12313462 ccgg 12313459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 25073662 - 25073839
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||| || ||| |    
T  25073662 aaataacagccactttaagccaagtataaaacggcggacaacatggcggcttcgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagt 25073761  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||    
T  25073762 ttttaaaacgccagaattgtgcatagtggcggctaaaaccgccgaaacatacattttttagctgccggaaaacacgcg 25073839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 25131633 - 25131810
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||| || ||| |    
T  25131633 aaataacagccactttaagccaagtataaaacggcggacaacatggcggcttcgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagt 25131732  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||    
T  25131733 ttttaaaacgccagaattgtgcatagtggcggctaaaaccgccgaaacatacattttttagctgccggaaaacacgcg 25131810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 40690819 - 40690993
Alignment:
Q  4 taactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaatttt 103  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | |  |||||||| ||||||||||| |||| || ||| ||||    
T  40690819 taaccgccactttaagccaagtatataacggcggacaacatggcggctacgtaaaaattcctgctttaaacattgtggcaggcgaaatttcggcagtttt 40690918  T
Q  104 taaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  40690919 taaaacgccagaattgtgcatagtggcggctaaaaccgccagaacatacattttttagccgccggaaaacacgcg 40690993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26701272 - 26701448
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||| ||| ||||||||| |||||| || ||| |    
T  26701272 aaataaccgccactttaagc-aagtataaaacggcggacaacattgcggctacgtaaaaactgccgcttttaacattgtggcagacaaaatttcggcagt 26701370  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  26701371 ttttaaaacgccagaattgtgcatagtggcggctaaaaccgccggaacatacattttttagccaccggaaaacacgcg 26701448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26971005 - 26971181
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||| ||| ||||||||| |||||| || ||| |    
T  26971005 aaataaccgccactttaagc-aagtataaaacggcggacaacattgcggctacgtaaaaactgccgcttttaacattgtggcagacaaaatttcggcagt 26971103  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  26971104 ttttaaaacgccagaattgtgcatagtggcggctaaaaccgccggaacatacattttttagccaccggaaaacacgcg 26971181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 41309931 - 41310108
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||| || ||| |    
T  41309931 aaataaccgccactttaaaccaagtatataacggcggacaacatggcggctacgtaaaaactgccgctttaaacattgtggcaggcgaaatttcggcagt 41310030  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    | || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  41310031 tcttgaaacggcagaattgtgcatagtggcggctaaaaccgccggaatatacattttttagccgccggaaaacacgcg 41310108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19546089 - 19546265
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |||| || ||| |    
T  19546089 aaataaccgccactttaaaccaagtatataacggcggacaacatggcggctacgtaaaaactgccgctttaaacattgtgccaggcgaaatttcggcagt 19546188  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  19546189 ttttgaaacgccagaattgtgcatagtggcggct-aaactgccggaatatacattttttagccaccggaaaacacgcg 19546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 34271540 - 34271461
Alignment:
Q  93 tcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaa 172  Q
    |||||| ||||||||| || ||||||||||||||| || |||||||| |  ||||||||||  ||||||||| |||||||    
T  34271540 tcagcagtttttaaaatgcgagaattgtgcatagtagcggctaaaaccgttggaacatacaaattttagccgacggaaaa 34271461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18558940 - 18558763
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||  ||||||| |||||||||||||||| || ||| |    
T  18558940 aaataaccgccactttaagccaagtataaaacggcggacaatatgacggctacataaaaactgccgttttaaacattgtggcaggcaaaatttcggcagt 18558841  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  18558840 ttttaaaacgccagaattatgcatagtggcggctaaaaccgccggaacatacattttttagccgccgaaaaacacgcg 18558763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5660799 - 5660976
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||| || ||| |    
T  5660799 aaataaccgccactataagccaagtataaaatggcggacaacgtggcggctacgtaaaaactgccgctttaaacattgtggcaggcaaaatttcggcagt 5660898  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    ||||||||||||  |||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||    
T  5660899 ttttaaaacgcctaaattgtacatagtggcggctaaaaccgccggaacatacattttttagccgtcggaaaacacgcg 5660976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26223696 - 26223873
Alignment:
Q  1 aaataactgccactttaagccaagtataaaacggcggacaacatggcggctacgtaaaaactaccactttaaaccttgtggcaggcaaaatatcagcaat 100  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||| |||| || ||| |    
T  26223696 aaataaccgccactttaaaccaagtatataacggcggacaacatggtggctacgtaaaaactgccgctttaaacattgtggcaggcgaaatttcggcagt 26223795  T
Q  101 ttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaaaacacgcg 178  Q
    | || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26223796 tcttgaaacgtcagaattgtgcatagtggcggctaaaaccgccggaatatacattttttagccgccggaaaacacgcg 26223873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 20474 - 20579
Alignment:
Q  67 ctttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgcc 166  Q
    |||||||| ||||||||| |||||| || ||| |||| ||| |||||||| ||| ||||| ||| ||||||||||||||||||| ||  |||||||||||    
T  20474 ctttaaactttgtggcagacaaaatttcggcagttttgaaaccgccagaaatgtacatagcggcggctaaaactgccggaacatccaaattttagccgcc 20573  T
Q  167 ggaaaa 172  Q
    ||||||    
T  20574 ggaaaa 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 18190 - 18085
Alignment:
Q  67 ctttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgcc 166  Q
    |||||||| |||||| || |||||| || ||| |||| ||| |||||||| ||| ||||||||| ||||||||||||||||||| ||  |||||||||||    
T  18190 ctttaaactttgtggtagacaaaatttcggcagttttgaaaccgccagaaatgtacatagtggcggctaaaactgccggaacatccaaattttagccgcc 18091  T
Q  167 ggaaaa 172  Q
    ||||||    
T  18090 ggaaaa 18085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 5879116 - 5879011
Alignment:
Q  67 ctttaaaccttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgcc 166  Q
    |||||||| ||||||||| |||||| || ||  |||| ||| |||||||| ||| ||||| ||| ||||||||||||||||||| ||  |||||||||||    
T  5879116 ctttaaactttgtggcagacaaaatttcggccgttttgaaaccgccagaaatgtacatagcggcggctaaaactgccggaacatccaaattttagccgcc 5879017  T
Q  167 ggaaaa 172  Q
    ||||||    
T  5879016 ggaaaa 5879011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 2693278 - 2693372
Alignment:
Q  76 ttgtggcaggcaaaatatcagcaatttttaaaacgccagaattgtgcatagtggcagctaaaactgccggaacatacattttttagccgccggaa 170  Q
    |||||||||| ||||| || ||| |||| ||| ||||||  ||||  |||||||| ||||||||||||| ||||  || ||||||||||||||||    
T  2693278 ttgtggcaggaaaaatttctgcagttttgaaaccgccagttttgtttatagtggcggctaaaactgccgcaacaagcaatttttagccgccggaa 2693372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University