View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_335 (Length: 245)
Name: NF9839A_low_335
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_335 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 36163121 - 36162890
Alignment:
| Q |
9 |
tggagttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagacag |
108 |
Q |
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| T |
36163121 |
tggagttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagtcag |
36163022 |
T |
|
| Q |
109 |
atagtttagtaaaaatacaaggccagtcttaatcaacttaaatgcagtaagacggat-nnnnnnnggacagcaagaggtttcaccttaaggagatacagc |
207 |
Q |
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| T |
36163021 |
atagtttagtaaaaatacaaggccagtcttaatcaactttaatgcagtaagacggataaaaaaaaggacagcaagaggcttcaccttaaggagatacagc |
36162922 |
T |
|
| Q |
208 |
tgggtcaaattcaagttgacacatgatagagc |
239 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36162921 |
tgggtcaaattcaagttgacacatgatagagc |
36162890 |
T |
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