View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_338 (Length: 244)
Name: NF9839A_low_338
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_338 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 29674938 - 29675149
Alignment:
| Q |
15 |
gacatcaacggaaggacaaggcacatgtagtaatgttgaagagaatgtagtgaaaaagatgcttatgttgaaaatgactcttaccattctcaggagctaa |
114 |
Q |
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| T |
29674938 |
gacatcaacggaaggacaaggggcatgtattaatgttgaagagaatgtagttaaaatgatgcttatgttgaaaatgactcctaccattctcaggagctaa |
29675037 |
T |
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| Q |
115 |
taagccctcttcagtattgatgatgaatatgatggaaatacaagacaaatttttctttattttgaatcaaatgcgaagtttggtaggaatgaaatttgaa |
214 |
Q |
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| T |
29675038 |
taagcccttttcagtattgatgatgaatatgatggaaatacgagacaaatttttcttcattttgaatcaaatgtgaagtttgctaggaataaaatttgaa |
29675137 |
T |
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| Q |
215 |
actttggatatt |
226 |
Q |
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| T |
29675138 |
actttgaatatt |
29675149 |
T |
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