View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_345 (Length: 244)
Name: NF9839A_low_345
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_345 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 9539217 - 9538999
Alignment:
| Q |
15 |
aagaatatgacacttgaaatgnnnnnnntaacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttnnnnnnnn-tagtatatttaaaaaa |
113 |
Q |
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| T |
9539217 |
aagaaaatgacacttgaaatgaaaaaaataacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttaaaaaaaaatagtatatttaaaaaa |
9539118 |
T |
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| Q |
114 |
tcatatttgaacttagttcataatttaaataattgaacaatgttccaacaacattgatatatcactgaaaaatttgtgtgagaagaatctgcaactataa |
213 |
Q |
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| T |
9539117 |
tcatatttgaacttagttcataatttaaataattcaacaatgttccaacaaaattgatatatcattgaaaaatttgtgtgagaagaatctgcaactataa |
9539018 |
T |
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| Q |
214 |
gctgatgcatgtgatgtcc |
232 |
Q |
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| T |
9539017 |
actgatgcatgtgatgtcc |
9538999 |
T |
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