View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_346 (Length: 244)
Name: NF9839A_low_346
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_346 |
 | |
|
| [»] scaffold0056 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 17963734 - 17963957
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
17963734 |
gggctggtcacgatattttcccactccagtcgtcacatgaatgtaccttactgtaaatttgagaaaattctaaacaaacagtcaacatcagattataaac |
17963833 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaact |
206 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17963834 |
acagtttgaggactttaagggttgtaatttgtcttaggttaagggtagatatatttgggaatgcatgctaacaaagaaacatatagttagattattaacc |
17963933 |
T |
|
| Q |
207 |
taaagattcctactaaacattgat |
230 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
17963934 |
tatagattcctactaaacattgat |
17963957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 24909328 - 24909528
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| |||||| |||||||||||||| ||||||| |
|
|
| T |
24909328 |
ccactctagtcatcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaaaatcaaattatatacacactttgaggattttaagg |
24909427 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacat |
226 |
Q |
| |
|
|||||||| || ||||| ||||| || ||||||||| |||| |||| ||||||||| ||| | |||||||||||| || || |||||| ||||||||| |
|
|
| T |
24909428 |
gttgtaatgtggcttaggttaagggtggatatatttgggaaagtagactaacaaagcaacttggagttagattatctacctagggattcccactaaacat |
24909527 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
24909528 |
t |
24909528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 15176185 - 15175964
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
||||||||| || |||| |||||| ||||| |||||| |||||| ||| ||||||||||| |||||||||||||| | ||||| |||||||||| || |
|
|
| T |
15176185 |
gggctggtcgcgacatttgtccacttcagtcatcacataaatgtatcttgctataaatttgaaacaattctaaacaaacggtcaaaatcagattatttac |
15176086 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaa--gagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaa |
204 |
Q |
| |
|
|||||| ||||||||| |||||| ||| ||||||||| |||| ||| | ||| |||| |||| |||||||||||||||||| || |||| ||| ||| |
|
|
| T |
15176085 |
acacttagaggactttgagggttataacttgtcttaggttaacggagaatata-atttgggaaagtaggctaacaaagaaactcggaattagtttaataa |
15175987 |
T |
|
| Q |
205 |
cttaaagattcctactaaacatt |
227 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
15175986 |
cttatagattcctactaaacatt |
15175964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 17511249 - 17511459
Alignment:
| Q |
8 |
ggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaaca |
107 |
Q |
| |
|
||||||||| || ||||| ||||||||||| ||||||||||||| ||| | ||||||||| ||||||||||| ||||||| || ||||||| ||| |
|
|
| T |
17511249 |
ggctggtcacgacattttcccactccagtcttcacatgaatgtatcttgctttaaatttgaagaaattctaaacagacagtcaaaatgagattatttaca |
17511348 |
T |
|
| Q |
108 |
cactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaactt |
207 |
Q |
| |
|
|||| |||||| |||||| ||| ||||||||| ||||| || ||||||||| |||| |||||||||||||||||||| | ||||| ||| |||| | |
|
|
| T |
17511349 |
cact-----gactttgagggttataacttgtcttaggttaagggtggatatatttgggaaagtaggctaacaaagaaacatggggttagtttactaacct |
17511443 |
T |
|
| Q |
208 |
aaagattcctactaaa |
223 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
17511444 |
agggattcctattaaa |
17511459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 24722089 - 24721911
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| |||||||||| |||||||| || |||||| | | |
|
|
| T |
24722089 |
ccactccagtcgtcacatgaatgtaccttgctataaatttgaagaaattataaacagacagtcaaaatcagattatttacacacttagaagactttgaag |
24721990 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaac |
205 |
Q |
| |
|
||| ||| | | ||||| ||||| || ||||||||| | || |||||||||||||||||| | ||||||| ||| |||| |
|
|
| T |
24721989 |
gttataactcggcttaggttaagggtggatatatttggaaaagtaggctaacaaagaaacttggagttagtttactaac |
24721911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 26829211 - 26829081
Alignment:
| Q |
13 |
gtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactt |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | | |||| ||||||| |
|
|
| T |
26829211 |
gtcatgacatttttccactccagtcgtcacatgaatgtaccttactataaatttgaaacaattctaaacagacagtcaagttaaagttattcacacacta |
26829112 |
T |
|
| Q |
113 |
tgaggactttaagggttgtaatttgtcttag |
143 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| |
|
|
| T |
26829111 |
tgaggacttcgagggttataatttggcttag |
26829081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 13833311 - 13833113
Alignment:
| Q |
31 |
tccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttg |
130 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||| ||||||||||||| || |||| |||| | |||| ||||||||||||| |||| ||||||| |
|
|
| T |
13833311 |
tccaatcgtcacatgaatgtaccttattgtaaatttgaaacaattctaaacagacaatcaagatcatactatatacacactttgaggtctttcagggttg |
13833212 |
T |
|
| Q |
131 |
taatttgtcttagattaagagtag-atatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacattga |
229 |
Q |
| |
|
||| || ||||| |||| || | |||||||| || |||| |||||| | |||| | |||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
13833211 |
taacgtggcttagggtaag-gtggcatatatttgagatagtagactaacatataaacttggagttagattatcaacctaaggattcctactaaacattga |
13833113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 17970850 - 17971066
Alignment:
| Q |
13 |
gtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactt |
112 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||| || |||| |||| | |||| |||||||| |
|
|
| T |
17970850 |
gtcacgatatttgcccacttcagtcgtcacatgaatgtaccttgctataaatttgaaacaattataaacagacattcaagatcatactatatacacactt |
17970949 |
T |
|
| Q |
113 |
tgaggactttaagggttgtaatttgtcttagattaagagtag-atatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaag |
211 |
Q |
| |
|
||||| |||| |||||| |||| | ||||| ||||| || | ||||||| |||| |||||||||||| ||| | |||||||||| | |||||| |
|
|
| T |
17970950 |
tgaggtctttgagggttataatgtagcttaggttaag-gtggaatatattagggaaaataggctaacaaaacaacttggagttagattttcaacttatga |
17971048 |
T |
|
| Q |
212 |
attcctactaaacattga |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17971049 |
attcctactaaacattga |
17971066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 18570839 - 18571065
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| | | | |||| || |
|
|
| T |
18570839 |
gggctggtcacgacatttacccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtccagttaaagttattgac |
18570938 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatat-attttggaatgtaggctaacaaagaaacatagagttagattattaac |
205 |
Q |
| |
|
||||| | ||||||| |||||| ||||||| ||||| ||||| || ||||| |||| |||| |||| |||||||| ||| | ||||||| ||| |||| |
|
|
| T |
18570939 |
acactaggcggactttgagggttataatttggcttaggttaagggtggatataatttgggaaagtagactaacaaaagaacttggagttagtttactaac |
18571038 |
T |
|
| Q |
206 |
ttaaagattcctact-aaacattgatg |
231 |
Q |
| |
|
| | |||||||| | ||||||||||| |
|
|
| T |
18571039 |
ctgaggattcctaataaaacattgatg |
18571065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 25180451 - 25180251
Alignment:
| Q |
28 |
cactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaaggg |
127 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||||||||||||||||| | || |||| | | ||||| |||| |||||||||||||||||| |
|
|
| T |
25180451 |
cactctagtcgtcacatgcatgtaccttgctataaatttgagacaattctaaatagacaatcaagttaaaattatttacacgctttgaggactttaaggg |
25180352 |
T |
|
| Q |
128 |
ttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctact-aaacat |
226 |
Q |
| |
|
|| ||| ||| |||| ||||| || ||||||||| |||||||| ||||||| ||| | ||||||| ||| |||| ||| |||||||||| |||||| |
|
|
| T |
25180351 |
ttataacttggcttatgttaag-gtggatatattt---aatgtaggataacaaaacaacttggagttagtttactaacctaaggattcctactaaaacat |
25180256 |
T |
|
| Q |
227 |
tgatg |
231 |
Q |
| |
|
||||| |
|
|
| T |
25180255 |
tgatg |
25180251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 17099946 - 17099789
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || |||| | | |||| |||||||| | | | | |
|
|
| T |
17099946 |
atttgtccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacaatcaagttaaagttattcacacacttggcgaatt |
17099847 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaa |
177 |
Q |
| |
|
|| |||||| ||||||| ||||||||||| || |||||||||| |||| ||||||||| |
|
|
| T |
17099846 |
ttgagggttataatttggcttagattaagggtggatatattttgggaaagtaggctaa |
17099789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 25227606 - 25227677
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
25227606 |
tggtcacgacattttcccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattataaaca |
25227677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 18446596 - 18446535
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
18446596 |
attttcccactccattcgtcacatgaatataccttgctataaatttgaaacaattctaaaca |
18446535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 21317149 - 21317211
Alignment:
| Q |
29 |
actccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaa |
91 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||| ||||||||||||| ||||||| |
|
|
| T |
21317149 |
actccagccgtcacatgaatgtaccttgctctaaatttgaaacaattctaaacagacagtcaa |
21317211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 24751170 - 24751236
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattct |
77 |
Q |
| |
|
||||||||| |||| |||| |||| |||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
24751170 |
tggtcatgacatttacacacttcagttgtcacatgaacgtaccttactataaatttgagacaattct |
24751236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 25572227 - 25572013
Alignment:
| Q |
18 |
gatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgagg |
117 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
25572227 |
gatattttcccattctagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaacatcaaattatatacacactttgagg |
25572128 |
T |
|
| Q |
118 |
actttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcct |
217 |
Q |
| |
|
||||| |||||||||| || |||| ||||| || |||| |||| |||| |||| ||||| ||||||| | |||||||||||| ||| ||| ||||| | |
|
|
| T |
25572127 |
acttttagggttgtaacgtggcttaagttaagggtggataaatttgggaaagtagtctaactaagaaacttggagttagattatcaacctaaggattctt |
25572028 |
T |
|
| Q |
218 |
actaaacattgatgt |
232 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
25572027 |
actaaagattgatgt |
25572013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 24262404 - 24262605
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| |||||| |||||| | |||||||||||||| | ||||||||||||||||||||||| ||||||| || | | |||| ||||||||||||| | |
|
|
| T |
24262404 |
attttcccactctagtcgttagatgaatgtaccttattgtaaatttgagacaattctaaacagacagtcaaaattaaactatatacacactttgaggtat |
24262503 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctact |
220 |
Q |
| |
|
|| |||||| |||| || |||| ||||| || ||||| | |||| ||||||||||||| ||| | |||||||||||| ||| ||| |||||||||| |
|
|
| T |
24262504 |
ttcagggttataatgtggtttaggttaagggtgaatatacatgggaaagtaggctaacaaaagaacttggagttagattatcaacctaaggattcctact |
24262603 |
T |
|
| Q |
221 |
aa |
222 |
Q |
| |
|
|| |
|
|
| T |
24262604 |
aa |
24262605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 31599825 - 31599612
Alignment:
| Q |
8 |
ggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagat-tataaac |
106 |
Q |
| |
|
||||||| |||| ||||| |||||| |||||||||||||||||| || | ||||||||| ||||||||||||| ||||||| | | | |||| || |
|
|
| T |
31599825 |
ggctggtgatgacattttcccactctagtcgtcacatgaatgtattttgctgtaaatttgaaacaattctaaacagacagtcaaagttaactatatacac |
31599726 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaact |
206 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| ||| | ||||| || ||||||||| |||| ||||||||||||||| || | ||||||| ||| |||| |
|
|
| T |
31599725 |
acactttgaggacttcaagggttataacttgacttgggttaagggtggatatatttgggaaagtaggctaacaaagacacttggagttagtttactaacc |
31599626 |
T |
|
| Q |
207 |
taaagattcctact |
220 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
31599625 |
tagggattcctact |
31599612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 24320255 - 24320105
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||| |||||||| ||||||||| | |
|
|
| T |
24320255 |
ccacttcagtcgtcacatgaatgtaccttgctataaatttgagacaattctaaacagacattcaaaatcagattatttacacacttagaggactttgaca |
24320156 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaa |
177 |
Q |
| |
|
||| ||| | ||||| ||||| || ||||||||| |||| ||||||||| |
|
|
| T |
24320155 |
gttataactcagcttaggttaagggtggatatatttgggaaagtaggctaa |
24320105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 26117715 - 26117883
Alignment:
| Q |
64 |
tttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttgtaatttgtcttagattaagagtagatatatttt |
163 |
Q |
| |
|
||||||||||||| |||||| ||||||| || |||||||| ||||||||||||||||||||||||||||| || | ||| |||| ||| |||||||||| |
|
|
| T |
26117715 |
tttgagacaattccaaacaaacagtcaa-attagattatatacacactttgaggactttaagggttgtaacgtggcgtaggttaatagtggatatatttt |
26117813 |
T |
|
| Q |
164 |
g-gaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacattgatgt |
232 |
Q |
| |
|
| || |||||| ||||||||||| | |||||| |||| ||| || ||||| |||||| ||||||||| |
|
|
| T |
26117814 |
gaaaaagtaggccaacaaagaaacttggagttacgttataaaccaaaggattcatactaatcattgatgt |
26117883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 34489212 - 34489422
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||| || | |||||| ||||| ||||||| || |
|
|
| T |
34489212 |
attttcccactccagtcgtcacgtgaatgtaccttgctgtaagtttgagacaattctaaacagacagtcaaaataatattatatacacattttgaggtct |
34489311 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctact |
220 |
Q |
| |
|
|| |||||| ||| || |||| ||||| || ||||||||| || |||| ||||||| ||| | ||||||| ||| |||| || ||||| |||| |
|
|
| T |
34489312 |
ttcagggttataacgtggtttaggttaagggtggatatatttaaaaaggtagattaacaaaagaacttggagttagtttaataacctagggattcttact |
34489411 |
T |
|
| Q |
221 |
aaacattgatg |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
34489412 |
aaacattgatg |
34489422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 20548190 - 20547987
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||| | | |||| |||||||| ||||||| |
|
|
| T |
20548190 |
attttcccactccagtcatcacatgaatgtaccttgctacaaatttacaacaattctaaacagatagtcaatttaaagttattcacacacttggaggact |
20548091 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctac |
219 |
Q |
| |
|
|| |||||| ||| ||| ||||| ||||| || |||||||||| |||| ||||||||| ||| ||| | ||||||| ||| |||| || ||||||||| |
|
|
| T |
20548090 |
ttgagggttataacttggcttaggttaagggtggatatattttgggaaagtaggctaataaaagaacttggagttagtttactaacctagagattcctaa |
20547991 |
T |
|
| Q |
220 |
taaa |
223 |
Q |
| |
|
|||| |
|
|
| T |
20547990 |
taaa |
20547987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 19053466 - 19053667
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||| |||||| |||||| |||| || | |||| |||||||| ||||||||| ||| |
|
|
| T |
19053466 |
ccactccagtcgtcacatgcaaataccttgctataaatttgaaacaattataaacagacagtgaagttatagttattcacacacttagaggactttgagg |
19053565 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaaca |
225 |
Q |
| |
|
||| ||| ||| ||||| |||||||| |||||||||| |||| ||||||||| ||| ||| | ||||||| | | |||| || ||||||| ||||||| |
|
|
| T |
19053566 |
gttataacttggcttaggttaagagtggatatattttgggaaagtaggctaataaaagaacttggagttagttcactaacctatggattccttctaaaca |
19053665 |
T |
|
| Q |
226 |
tt |
227 |
Q |
| |
|
|| |
|
|
| T |
19053666 |
tt |
19053667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 24656758 - 24656623
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||| ||| || | | |||| |||||||||||||| | || || |
|
|
| T |
24656758 |
ccactccagttgtcacatgaatgtaccttgcagtaaatttcagacaatttaaaacagacagccaaaattaaaatatatacacactttgaggattgtatgg |
24656659 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattt |
162 |
Q |
| |
|
||| ||| ||| ||||||||||| || ||||||||| |
|
|
| T |
24656658 |
gttataacttggcttagattaagggtggatatattt |
24656623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 23597964 - 23598032
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaa |
79 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| || ||| ||||| ||| |||||||| |
|
|
| T |
23597964 |
tggtcatgacattttaccactccagtcgtcacatgaatgtactttgctattaatttaagagaattctaa |
23598032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 31212980 - 31213148
Alignment:
| Q |
63 |
atttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattt |
162 |
Q |
| |
|
||||||||||||| |||||| | ||||| | | ||||| |||||||||||||| ||| |||||| ||||||| ||||| || || || ||||||||| |
|
|
| T |
31212980 |
atttgagacaattttaaacagaccgtcaagttaaaattatttacacactttgaggattttgagggttataatttggcttaggttgagggtggatatattt |
31213079 |
T |
|
| Q |
163 |
tggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacattgatg |
231 |
Q |
| |
|
|||| ||| |||||||| ||| | ||||||| ||| |||| || | ||||||| ||||||||||| |
|
|
| T |
31213080 |
gggaaagtaaactaacaaaagaacttcgagttagtttactaacctagggcttcctacaaaacattgatg |
31213148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 25407899 - 25407714
Alignment:
| Q |
42 |
catgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttgtaatttgtctt |
141 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |||| || | | || | |||| ||| ||||||||| |||||| ||| ||| ||| |
|
|
| T |
25407899 |
catgaatgtaccttgctataaatttgaaacaattctaaacagacagttaagttaaagttgttcacac-cttagaggactttgagggttataacttggctt |
25407801 |
T |
|
| Q |
142 |
agattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacatt |
227 |
Q |
| |
|
|| ||||| | ||||||||| |||| ||||||||||||| ||| | ||||||| | | |||| ||| ||||||| ||||||||| |
|
|
| T |
25407800 |
aggttaaggatgcatatattttgggaaagtaggctaacaaaagaacttggagttagttcactaacctaaggattccttctaaacatt |
25407714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 16115143 - 16115363
Alignment:
| Q |
8 |
ggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaaca |
107 |
Q |
| |
|
||||| ||| || ||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||||| | ||||||| |||| ||||| ||| |
|
|
| T |
16115143 |
ggctgatcacgacattttcccactccagtcgtcacatcaatgtaccttgctataaatttgaaacaattctaaatagacagtcaaaatcaatttatataca |
16115242 |
T |
|
| Q |
108 |
cactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaa-catagagttagattattaact |
206 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| ||||| |||||||||||| | || |||||||||||||||| | | |||||||||||| ||| |
|
|
| T |
16115243 |
cactttgaggactttaagggttataacatggcttagtttaagggtagatatatttggaaaaataggctaacaaagaaaccttggagttagattatcaacc |
16115342 |
T |
|
| Q |
207 |
taaagattcctactaaacatt |
227 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
16115343 |
tagggattcctactaaacatt |
16115363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 21979665 - 21979737
Alignment:
| Q |
10 |
ctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||| ||| | ||||||||| |||||| |||||| |
|
|
| T |
21979665 |
ctggtcacgacatttgcccactccagtcgtcacatgaatgtactttactgtaaatttgaaacaattttaaaca |
21979737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 21981883 - 21981955
Alignment:
| Q |
10 |
ctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||| ||| | ||||||||| |||||| |||||| |
|
|
| T |
21981883 |
ctggtcacgacatttgcccactccagtcgtcacatgaatgtactttactgtaaatttgaaacaattttaaaca |
21981955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 18827741 - 18827968
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaa-ttctaaacaagcagtcaacatcagattataaa |
105 |
Q |
| |
|
|||||||||| || |||| ||||| |||||||||| |||||||||||| || |||||||| | || ||||||||| || ||| ||| |||| | |
|
|
| T |
18827741 |
gggctggtcacgacatttgcccacttcagtcgtcacgtgaatgtaccttgctacaaatttgaaaaaaattctaaacagacatccaagttcaagttattca |
18827840 |
T |
|
| Q |
106 |
cacactttgaggactttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaa |
204 |
Q |
| |
|
|||||| ||||||||| ||| || ||| ||| ||||| ||||| || |||||||||| |||| ||||||||| ||| ||| | ||||||| | | ||| |
|
|
| T |
18827841 |
cacactaggaggactttgaggattataaattggcttagtttaagggtggatatattttgggaaagtaggctaataaaagaacttggagttagttcactaa |
18827940 |
T |
|
| Q |
205 |
cttaaagattcctactaaacattgatgt |
232 |
Q |
| |
|
| || ||||||||||||||||| |||| |
|
|
| T |
18827941 |
cctagggattcctactaaacattaatgt |
18827968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 24526733 - 24526956
Alignment:
| Q |
8 |
ggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaaca |
107 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||||||| | | | ||||| ||||||||||||| | || |||| ||||||||||| ||| |
|
|
| T |
24526733 |
ggctggtcacgacatttttccacttcagtcgtcacatgaatgtaccatgctgt-aatttaagacaattctaaatagacattcaaaatcagattatataca |
24526831 |
T |
|
| Q |
108 |
cactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaactt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| |||| ||| ||||||||| | || |||||||||||||||||| | |||| |||||| ||| | |
|
|
| T |
24526832 |
cactttgaggactttcagggttgtaatatgacttacgttaatagtggatatatttagtaaagtaggctaacaaagaaacttgaagtttgattatcaacct |
24526931 |
T |
|
| Q |
208 |
aaagattcctactaaacattgatgt |
232 |
Q |
| |
|
|| |||||||||||| ||| ||||| |
|
|
| T |
24526932 |
aaggattcctactaatcatcgatgt |
24526956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 23009777 - 23009572
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| || | |||| ||| ||||||||| |||| ||| |
|
|
| T |
23009777 |
ccactccagtcgtcacatgaatgtaccttgctgtaaatttgagacaattctaaacagtcagtcaagatttaactatatacatactttgaggtctttcagg |
23009678 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaaca |
225 |
Q |
| |
|
||| | | || ||||| ||||| || |||||||||| ||| ||||||||||||| ||| | ||||||| ||| |||| || ||||||| ||||||| |
|
|
| T |
23009677 |
gttatggtgtggcttaggttaagggtggatatattttgggacagtaggctaacaaaagaacttggagttagtttactaacctagggattccttctaaaca |
23009578 |
T |
|
| Q |
226 |
ttgatg |
231 |
Q |
| |
|
|||||| |
|
|
| T |
23009577 |
ttgatg |
23009572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 25885944 - 25885727
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacac |
110 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| || |||| |||||| | | ||||| |||||| |
|
|
| T |
25885944 |
tggtcacgacattttcccactccagtcttcacatgaatgtaccttgctataaatttgaaacaattttatacaaatagtcaagttaaaattatttacacac |
25885845 |
T |
|
| Q |
111 |
tttgaggactttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaa |
209 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| ||||| || ||||| |||| |||| ||||||||| ||| ||| | || |||| ||| |||| ||| |
|
|
| T |
25885844 |
tttgaggactttaagggatataatttggcttaggttaagggtggatattttttgggaaagtaggctaaaaaaagaacttggatttagtttactaacctaa |
25885745 |
T |
|
| Q |
210 |
agattcctactaaacatt |
227 |
Q |
| |
|
|||| |||||| ||||| |
|
|
| T |
25885744 |
ggatttctactatacatt |
25885727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 28918548 - 28918754
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||| ||| || |||| ||||| |||||||| ||||| | |
|
|
| T |
28918548 |
attttcccactccagtcgtcacgtgaatgtatcttgctataaatttgaaacaattctaaacagatagtaaaaatcatattatttacacacttagaggaat |
28918647 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctact |
220 |
Q |
| |
|
|| | |||| ||| ||| | ||| ||||| || |||||||||||||| ||||||||||||| ||| | |||||| | | |||| || |||||||||| |
|
|
| T |
28918648 |
ttgatggttataacttgacataggttaagggtggatatattttggaaagtaggctaacaaaagaacttggagttacttcactaacctagggattcctact |
28918747 |
T |
|
| Q |
221 |
aaacatt |
227 |
Q |
| |
|
||||||| |
|
|
| T |
28918748 |
aaacatt |
28918754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 25532604 - 25532755
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | | |||| ||||||| ||||||||| ||| |
|
|
| T |
25532604 |
ccactctagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaagttaaagttattcacacactaagaggactttgagg |
25532703 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaa |
177 |
Q |
| |
|
||| ||| ||| ||||| ||||| || |||||||||| |||| ||||||||| |
|
|
| T |
25532704 |
gttataacttggcttaggttaagggtggatatattttgggaaagtaggctaa |
25532755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 25922969 - 25923033
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaa |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
25922969 |
ccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaa |
25923033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 27907273 - 27907200
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaa |
80 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
27907273 |
gggctggtcatggcattttcccactccagtcgtcatatgaatatacctttttataaatttgagacaattttaaa |
27907200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 39270009 - 39269805
Alignment:
| Q |
23 |
ttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggacttt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||||| |||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
39270009 |
ttttccactccagtcgtcacatgaatgtaccttgctataaatttgaaagaattataaacagatagtcaaaatcagattatttacacacttagaggacttt |
39269910 |
T |
|
| Q |
123 |
aagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaa |
222 |
Q |
| |
|
||||| ||| ||| ||| | ||||| || ||||||||| |||| ||||||||||||| | | | ||||||| | | |||| |||||||||||||||| |
|
|
| T |
39269909 |
gtgggttataacttggctttggttaagggtggatatatttgggaaagtaggctaacaaaagagcttggagttagttcagtaacctaaagattcctactaa |
39269810 |
T |
|
| Q |
223 |
acatt |
227 |
Q |
| |
|
||||| |
|
|
| T |
39269809 |
acatt |
39269805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 6039049 - 6038838
Alignment:
| Q |
12 |
ggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacact |
111 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| ||| || ||||||| |
|
|
| T |
6039049 |
ggtcaagatatttgtccactccattcgtcacatgaatgtaccttactataaatttgaaacaattctaaacagacagtcaagatcaaattttatacacact |
6038950 |
T |
|
| Q |
112 |
ttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaag |
211 |
Q |
| |
|
|||||| ||| || ||| ||| || ||||| ||||| || |||||||| | || ||||||||||||| ||| |||||||||||| ||| ||| | |
|
|
| T |
6038949 |
ttgaggtcttctagagttataacgtggcttaggttaagggtgaatatatttggcaaagtaggctaacaaaagaactgggagttagattatcaacctaagg |
6038850 |
T |
|
| Q |
212 |
attcctactaaa |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6038849 |
attcctactaaa |
6038838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 2506563 - 2506355
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||| | ||||||| ||||||||||| ||| || |||||| | |
|
|
| T |
2506563 |
atttttccactaaagtcatcacatgaatgtaccttgttgtaaatttgagacaattctaaatagtcagtcaagatcagattatatacatacattgaggttt |
2506464 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctact |
220 |
Q |
| |
|
|| ||||||| | || ||||| ||| | ||||||||| |||| || |||| ||| |||| | |||||||||||| ||| ||| |||||||||| |
|
|
| T |
2506463 |
ttccgggttgtgacatggcttaggttatggtgggatatatttgggaaaatatgctacgaaaaaaacttggagttagattatcaacctaaggattcctact |
2506364 |
T |
|
| Q |
221 |
aaacattga |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
2506363 |
aaacattga |
2506355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 12388877 - 12389044
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacac |
110 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||| | | | || |||||| |
|
|
| T |
12388877 |
tggtcacgacattttctcactccagtcgtcacatgaatgtaccttgctataaatttgaaactattctaaacagacagtcaagttaaagtcattcacacac |
12388976 |
T |
|
| Q |
111 |
tttgaggactttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaa |
177 |
Q |
| |
|
|| ||||||||| |||||| ||| ||| ||||| ||||| || |||||||||| |||| ||||||||| |
|
|
| T |
12388977 |
ttagaggactttgagggttataacttggcttaggttaagggttgatatattttgggaaagtaggctaa |
12389044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 13252442 - 13252284
Alignment:
| Q |
23 |
ttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggacttt |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| || |||| | | |||| ||||| || ||||||||| |
|
|
| T |
13252442 |
ttttccactccaatcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacaatcaagttaaagttattcacacatttggaggacttt |
13252343 |
T |
|
| Q |
123 |
aagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaa |
181 |
Q |
| |
|
|||||| ||| ||| | ||| ||||| | |||||||||| |||||||||||| |||| |
|
|
| T |
13252342 |
gagggttataacttggcataggttaaggctggatatatttttgaatgtaggctaccaaa |
13252284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 20577898 - 20577975
Alignment:
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaa |
184 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||| ||||| ||||| || |||||| ||||||| |||||||||||||||| |
|
|
| T |
20577898 |
acacttggaggactttgagggttataatttggcttaggttaagggtggatataatttggaaagtaggctaacaaagaa |
20577975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 13287461 - 13287378
Alignment:
| Q |
8 |
ggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaa |
91 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||| |
|
|
| T |
13287461 |
ggctggtcacaacattttcccacttcagtcgtcacatgaatgtaccttgctataaatttgaaacaattataaacatacagtcaa |
13287378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 13755664 - 13755510
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacac |
110 |
Q |
| |
|
|||||| || ||||| ||||| ||||| |||||||||||||||| ||||||||||| ||||||||||| | ||||||| | | |||| |||||| |
|
|
| T |
13755664 |
tggtcacgacattttcccactacagtcaccacatgaatgtaccttgttataaatttgaaacaattctaaatagacagtcaagttaaagttatttacacac |
13755565 |
T |
|
| Q |
111 |
tttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttgg |
165 |
Q |
| |
|
|| |||||||| |||||| ||| ||| ||||| |||| || |||||||||||| |
|
|
| T |
13755564 |
ttgaaggactttgagggttataacttggcttaggttaacggtggatatattttgg |
13755510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 8316808 - 8316710
Alignment:
| Q |
31 |
tccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggtt |
129 |
Q |
| |
|
||||||| || |||||||||||||| | ||||||||||| |||| |||||| || |||| || | ||||| |||||| |||||||||||||||||| |
|
|
| T |
8316808 |
tccagtcctctcatgaatgtaccttgctctaaatttgagataattttaaacagacaatcaaaattaaattatgtacacacattgaggactttaagggtt |
8316710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 9786696 - 9786595
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||| ||||||||||| |||||| ||| | || |||| |||| | |||| ||||||||||||| || |
|
|
| T |
9786696 |
attttcccactctagttgtcacatgaatgtaccttgctataaatttgaaacaatttcaaatagacattcaagatcatagtatatacacactttgaggtct |
9786597 |
T |
|
| Q |
121 |
tt |
122 |
Q |
| |
|
|| |
|
|
| T |
9786596 |
tt |
9786595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 20577841 - 20577886
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtac |
52 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
20577841 |
gggctggtcacgatatttttccactctagtcatcacatgaatgtac |
20577886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 21522872 - 21523013
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||| ||||||||| | || ||||||||| ||||||||||||||| ||| ||| ||| ||||| || |
|
|
| T |
21522872 |
gggctggtcacgatatttgcccacttcattcgtcgcatgaatgttcgttgctataaattttagacaattctaaacagacagacaaattcaaattatttac |
21522971 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaa |
148 |
Q |
| |
|
||| || |||||||| |||||| ||| ||| ||||| |||| |
|
|
| T |
21522972 |
acatttaaaggactttgagggttataacttggcttaggttaa |
21523013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 13281484 - 13281429
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
||||| ||||||||||||||||| || ||| | | ||||||||||||||||||||| |
|
|
| T |
13281484 |
ccacttcagtcgtcacatgaatgcactttactctgaatttgagacaattctaaaca |
13281429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 20827927 - 20827727
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||||| ||||||||||| | || |||| | | ||||| |||||||||||||||||||||| |
|
|
| T |
20827927 |
ccactccagtcgtcacataaatgtaccttgctgtaaatttgaaacaattctaaatagacaatcaaagttaaattatgtacacactttgaggactttaagg |
20827828 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacat |
226 |
Q |
| |
|
||| ||| ||||| ||| ||||| || ||||||| |||| |||||||||||||||||| | ||||||| | | |||| || ||||||||||||||||| |
|
|
| T |
20827827 |
gttataacttgtcataggttaagggtcagtatatttgggaaagtaggctaacaaagaaacttggagttagttcactaacctacagattcctactaaacat |
20827728 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
20827727 |
t |
20827727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 13131599 - 13131446
Alignment:
| Q |
29 |
actccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggt |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | | |||| ||||||||||||||||| ||||| |
|
|
| T |
13131599 |
actccagtcgtcacatgaatgtaccttgttataaatttgaaacaattctaaacagacagtcaagttaaagttattcacacactttgaggacttagagggt |
13131500 |
T |
|
| Q |
129 |
tgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaa |
181 |
Q |
| |
|
| ||| ||| ||||| ||||| || |||||||||| |||| ||| ||||||||| |
|
|
| T |
13131499 |
tataacttggcttaggttaagggttgatatattttgggaaagtaagctaacaaa |
13131446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 9054353 - 9054533
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggact |
120 |
Q |
| |
|
||||| |||| ||||||||||||| || ||||| ||| ||||||||||||| ||||||| ||||||| |||| |||||| ||| ||||||| |||| |
|
|
| T |
9054353 |
attttcccacaccagtcgtcacattaaagtacccggctatgaatttgagacaatgctaaacagacagtcaaaatcaaattatatacatactttgacgact |
9054452 |
T |
|
| Q |
121 |
ttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattat |
201 |
Q |
| |
|
|| ||||||||||| || |||| |||| || ||||||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
9054453 |
ttcagggttgtaatgtggcttaagttaaatgtggatatatttgaaaaagtaggctaacaaagaaacttggagttagattat |
9054533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 25096642 - 25096795
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | | | || || |
|
|
| T |
25096642 |
gggctggtcacgacatttgcccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaagttaaagtcattgac |
25096741 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatat |
160 |
Q |
| |
|
|||||| ||||||||| |||||| ||| ||| ||||| ||||| || ||||||| |
|
|
| T |
25096742 |
acacttggaggactttgagggttataacttggcttaggttaagtgtcgatatat |
25096795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 17109059 - 17109196
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||| | | |||| |||||||| |||||||| ||| |
|
|
| T |
17109059 |
ccacttcagtcgtcacatgaatgtaccttgctataaatttgaaacaattttaaacagacagtcaagttaaagttattcacacacttaaaggactttgagg |
17109158 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttg |
164 |
Q |
| |
|
||| ||| ||| ||||| ||||| || |||||||||| |
|
|
| T |
17109159 |
gttataacttgacttaggttaagggtgaatatattttg |
17109196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 12608300 - 12608402
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| | ||||||| | | |||| |||||||| ||||||||| ||| |
|
|
| T |
12608300 |
ccactccagtcgtcacatgaatgtatcttgctataaatttgaaacaattctaaatagacagtcaagtttaagttattcacacacttagaggactttgagg |
12608399 |
T |
|
| Q |
127 |
gtt |
129 |
Q |
| |
|
||| |
|
|
| T |
12608400 |
gtt |
12608402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 22346419 - 22346532
Alignment:
| Q |
9 |
gctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacac |
108 |
Q |
| |
|
|||||||| || |||| ||||||| || |||||||||||||||||| | |||||||||||||| | ||||||| || |||| |||| | |||| |||| |
|
|
| T |
22346419 |
gctggtcacgacatttgtccactctggttgtcacatgaatgtaccttgctgtaaatttgagacaaatataaacaaacattcaagatcatactatatacac |
22346518 |
T |
|
| Q |
109 |
actttgaggacttt |
122 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
22346519 |
attttgaggtcttt |
22346532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 4617458 - 4617520
Alignment:
| Q |
29 |
actccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaa |
91 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||||||||| | ||||||||||| | |||||| |
|
|
| T |
4617458 |
actccaatcgtcacttgaatgtaccttactataaatttgaaataattctaaacaggaagtcaa |
4617520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 13842358 - 13842314
Alignment:
| Q |
35 |
gtcgtcacatgaatgtaccttaatataaatttgagacaattctaa |
79 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13842358 |
gtcgtcacatgaatgtaccttgttgtaaatttgagacaattctaa |
13842314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 11782851 - 11782914
Alignment:
| Q |
21 |
atttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaa-ttctaaacaa |
83 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
11782851 |
atttgtccattccaatcgtcacatgaatgtaccttgttataaatttgaaacaatttctaaacaa |
11782914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 8145613 - 8145813
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||| || |||||||||| |||||||| | |||||| ||| |
|
|
| T |
8145613 |
ccactccagtcatcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagttaaaatcagattatttacacacttataagactttcagg |
8145712 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacat |
226 |
Q |
| |
|
||| ||| ||| |||| |||||| || |||||||| ||| ||||||||||||| ||| ||||||||| | | |||| ||| |||||||| ||||||| |
|
|
| T |
8145713 |
gttataacttgacttatattaagggtgaatatatttgagaaagtaggctaacaaaataacttagagttagttcactaacctaaggattcctaataaacat |
8145812 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
8145813 |
t |
8145813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 8766048 - 8766194
Alignment:
| Q |
36 |
tcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttgtaatt |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||| || ||| |||||||||| |||||||| ||||||||| |||||| ||| | |
|
|
| T |
8766048 |
tcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacagacaaccaaaatcagattatttacacacttagaggactttgagggttataact |
8766147 |
T |
|
| Q |
136 |
tgtcttagattaagagtagatatattttggaatgtaggctaacaaag |
182 |
Q |
| |
|
|| ||||| ||||| || ||||||||| |||| |||||||||||||| |
|
|
| T |
8766148 |
tgacttaggttaagggtggatatatttgggaaagtaggctaacaaag |
8766194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 13905643 - 13905447
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||| |||| ||||||||||| || || ||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||| ||||||| ||| |
|
|
| T |
13905643 |
ccactctagtcatcacatgaatgcactttgctataaatttgaaacaattctaaacagacagtcaaaatcagattatttacacactttggggactttcagg |
13905544 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaaca |
225 |
Q |
| |
|
|||||||| || ||||| ||||| || |||||| ||| ||||||||||||| |||| | ||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
13905543 |
gttgtaatatggcttaggttaagggt--taatatttgagaaagtaggctaacaaaaaaacttggagttagtttatcaacctagggattcctactaaaca |
13905447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 34276172 - 34275971
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||| | |||||| |||||| || ||| |
|
|
| T |
34276172 |
ccactccagacatcacatgaatgtaccttgctataaatttgaaacaattctaaacagacagtcaaaatcagattatttaaacacttagaggacattgagg |
34276073 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaaca |
225 |
Q |
| |
|
||| ||| ||| ||||| | ||| | |||||||||| |||| ||||| || |||| ||| ||||||||| | | |||| || ||||||||||||||| |
|
|
| T |
34276072 |
gttataacttggcttaggtcaaggggggatatattttgggaaagtagggtagcaaaagaacttagagttagttcactaacctagggattcctactaaaca |
34275973 |
T |
|
| Q |
226 |
tt |
227 |
Q |
| |
|
|| |
|
|
| T |
34275972 |
tt |
34275971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 28325892 - 28325718
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| || |||| |||||| |||||||||||||||||||||| | ||||||||||||||||| ||| | |||||| |||| |||||| || |
|
|
| T |
28325892 |
gggctggtcacgacatttgcccactctagtcgtcacatgaatgtaccttgctgtaaatttgagacaattcgaaagagaaagtcaagatcaaattatatac |
28325793 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaa |
181 |
Q |
| |
|
||||||||||| |||| ||||||||| || ||| | |||| || ||||||||| |||| |||||||||||| |
|
|
| T |
28325792 |
acactttgaggtctttcagggttgtagcatggcttgggttaatggttgatatatttgggaaaataggctaacaaa |
28325718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 19912953 - 19913037
Alignment:
| Q |
28 |
cactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
19912953 |
cactccagtcgtcacatgaatgtaccatactataaatttgaaacaattctaaacagacagtcaaaatcagattatttacacactt |
19913037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 12770949 - 12770778
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||| ||| ||| | | ||||| || |
|
|
| T |
12770949 |
gggctggtcacgacattttcccactctagtcgtcacatgagtgtaccttgctataaatttgaaacaattctaaacagacagacaagttaaaattatttac |
12770850 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttgg-aatgtaggctaa |
177 |
Q |
| |
|
||| || || || ||| |||||| ||| ||| ||||| ||||| || |||||||||||| |||||||||||| |
|
|
| T |
12770849 |
acatttagaagaatttgagggttataacttgacttaggttaagggtggatatattttggaaatgtaggctaa |
12770778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 19167107 - 19166987
Alignment:
| Q |
9 |
gctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacac |
108 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| | |||||| |||||| ||||||| |||| ||||| |||| |
|
|
| T |
19167107 |
gctggtcatgacatttgcccactccagtcgtcacatgaatgtaccttgctataaatttcaaacaattttaaacagacagtcaaaatcaaattatttacac |
19167008 |
T |
|
| Q |
109 |
actttgaggactttaagggtt |
129 |
Q |
| |
|
||| |||| |||| |||||| |
|
|
| T |
19167007 |
gcttagagggctttgagggtt |
19166987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 17140552 - 17140653
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| | |||||||||||||||||| ||||||| || | |||||| ||||||||||||| |||| ||| |
|
|
| T |
17140552 |
ccactccagtcgtcacat-aatgtaccttgctatagacttgagacaattctaaacagacagtcaaaattaaattatatacacactttgaggtctttcagg |
17140650 |
T |
|
| Q |
127 |
gtt |
129 |
Q |
| |
|
||| |
|
|
| T |
17140651 |
gtt |
17140653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 8770944 - 8771068
Alignment:
| Q |
58 |
tataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggttgtaatttgtcttagattaagagtagata |
157 |
Q |
| |
|
||||||||||| ||||||||||| | ||| ||| |||||| ||| |||||||| ||||| ||| |||||| ||| ||| ||||| ||||| || |||| |
|
|
| T |
8770944 |
tataaatttgaaacaattctaaatagacagccaaaatcagagtatttacacacttagaggattttgagggttataacttgacttaggttaagggtggata |
8771043 |
T |
|
| Q |
158 |
tattttggaatgtaggctaacaaag |
182 |
Q |
| |
|
||||| |||| |||||||||||||| |
|
|
| T |
8771044 |
tatttgggaaagtaggctaacaaag |
8771068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 52935272 - 52935072
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| || | || ||| |||| ||||||||||| ||||| || | |
|
|
| T |
52935272 |
ccactccagtcgtcacatgaatgtaccttgctataaatttgaaacaattttaaacagacaattaaattcaaattagttacacactttgaagacttcaaag |
52935173 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacat |
226 |
Q |
| |
|
||| ||| ||| ||||| || || | ||||||||| |||| || |||||||||||||| | || ||| || |||| || | ||||||||||||||| |
|
|
| T |
52935172 |
gttataacttgacttaggttgagtgcggatatatttgggaaaataagctaacaaagaaacttgaaggtagtatactaacctagaaattcctactaaacat |
52935073 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
52935072 |
t |
52935072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 8881153 - 8880982
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaac |
106 |
Q |
| |
|
|||||||||| || |||| |||||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||||| | | |||| | |
|
|
| T |
8881153 |
gggctggtcacgacatttgcccactccagtcgccacatgaacgtaccttgctataaatttgaataaattctaaacagacagtcaagttaaagttattcgc |
8881054 |
T |
|
| Q |
107 |
acactttgaggactttaagggttgtaatttgtcttagattaagagtagatatatttt-ggaatgtaggctaa |
177 |
Q |
| |
|
| |||| ||||||||| |||||| ||| ||| ||||||||||| || |||||||||| |||| ||||||||| |
|
|
| T |
8881053 |
aaacttggaggactttgagggttataacttggcttagattaagggtggatatattttgggaaagtaggctaa |
8880982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 17404498 - 17404340
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||||| | ||||||||||| || || | | | |||| |||||||| | ||||||| ||| |
|
|
| T |
17404498 |
ccactccagtcgtcaaatgaatgtaacttgctataaatttgaaataattctaaacagacaatcgagttaaagttattcacacacttagtggactttgagg |
17404399 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttgg-aatgtaggctaacaaagaa |
184 |
Q |
| |
|
||| ||| ||| ||||| ||||| || |||||||||||| || |||||||||||||||| |
|
|
| T |
17404398 |
gttataaattggcttaggttaagggtggatatattttggaaaagtaggctaacaaagaa |
17404340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 4839253 - 4839338
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatca |
96 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||||||||| ||| || ||||||||||| || |||||||| ||||||| |||| |
|
|
| T |
4839253 |
tggtcacgatatttgtccactctagtcgtcacatgaatgtatcttgatgtaaatttgagagaactctaaacagacagtcaagatca |
4839338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 19913035 - 19913123
Alignment:
| Q |
139 |
cttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacatt |
227 |
Q |
| |
|
||||| ||||| || ||||||||| |||| ||||||||||||| ||| | ||||||| | | |||| ||| ||||||||||||||||| |
|
|
| T |
19913035 |
cttaggttaagggtggatatatttcggaaagtaggctaacaaatgaacttggagttagttcactaacctaaggattcctactaaacatt |
19913123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 20338033 - 20337917
Alignment:
| Q |
6 |
cgggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaa |
105 |
Q |
| |
|
|||||||||||||| |||| | ||||||||| ||||||||| ||| ||| | ||||||||| | |||| |||||| || |||| |||| | |||| | |
|
|
| T |
20338033 |
cgggctggtcatgacatttgcctactccagtcatcacatgaacgtatcttgctctaaatttgaaataattttaaacatacattcaagatcatactatata |
20337934 |
T |
|
| Q |
106 |
cacactttgaggacttt |
122 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
20337933 |
cacactttgaggtcttt |
20337917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 16224550 - 16224625
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaaca |
82 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| |||||||||| || || ||||||| | |||||| |||||| |
|
|
| T |
16224550 |
gggctggtcacgacatttgcccactccagtcgtcatatgaatgtactttgatgtaaattttaaacaattgtaaaca |
16224625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 18735064 - 18735001
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaat |
74 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
18735064 |
tggtcacgatatttatccactacagtcgtcacatgaatgtactttgctgcaaatttgagacaat |
18735001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 22570208 - 22570408
Alignment:
| Q |
27 |
ccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagg |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||| | | ||||||||| ||||||||| | |||||| || | |||||| ||||||||||||||||||||| |
|
|
| T |
22570208 |
ccactctagtcgtcacatgaatgtaccttgctgtgaatttgagagaattctaaatagacagtcacaattaaattatatacacactttgaggactttaagc |
22570307 |
T |
|
| Q |
127 |
gttgtaatttgtcttagattaagagtagatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacat |
226 |
Q |
| |
|
||| ||| ||| ||||| |||| || ||||||||| |||| ||||||||||||| ||| | || |||| ||| |||| || ||||| |||||||||| |
|
|
| T |
22570308 |
gttataacttgccttaggttaaaggtggatatatttgggaaagtaggctaacaaaagaacttggaattagtttactaacctagggattcatactaaacat |
22570407 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
22570408 |
t |
22570408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 21845475 - 21845260
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacac |
110 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
21845475 |
tggtcacgacattttcccactccagtcgtcacatgattgtaccttgctataaatatgaagaaattctaaacagacagtcaaaatcagattatttacacac |
21845376 |
T |
|
| Q |
111 |
tttgaggactttaagggttgtaatttgtcttagattaagagtagatatattttggaa---tgtaggctaacaaagaaacatagagttagattattaactt |
207 |
Q |
| |
|
| |||||||| || ||| ||| ||| ||||| ||||| || ||||||||| |||| ||||| |||||||||||| | ||||||| ||| |||| | |
|
|
| T |
21845375 |
taggaggacttggagagttataacttggcttaggttaagggtggatatatttaggaaattagtaggttaacaaagaaacttggagttagtttactaacct |
21845276 |
T |
|
| Q |
208 |
aaagattcctactaaa |
223 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
21845275 |
agggattcctactaaa |
21845260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 15552609 - 15552712
Alignment:
| Q |
29 |
actccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacactttgaggactttaagggt |
128 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| |||| ||||| ||||||||||||| |||| ||||| |
|
|
| T |
15552609 |
actctagtcgtcacatgaatgtaccttgctataaatttgaaacaattctaaacaaacattcaa-atcatgttatacacacactttgaggtcttttagggt |
15552707 |
T |
|
| Q |
129 |
tgtaa |
133 |
Q |
| |
|
||||| |
|
|
| T |
15552708 |
tgtaa |
15552712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 19721577 - 19721509
Alignment:
| Q |
28 |
cactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
19721577 |
cactccagtcgtcacatgaatgtaccttgcggtaaatatgagacaattctaaacaactagtcaaaatca |
19721509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 8322686 - 8322612
Alignment:
| Q |
7 |
gggctggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaac |
81 |
Q |
| |
|
|||||||||| || ||||| || |||||||||||| |||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
8322686 |
gggctggtcacgacattttctcattccagtcgtcacgtgaatgtaccttgctatgaatttgaaacaattctaaac |
8322612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 22526311 - 22526238
Alignment:
| Q |
154 |
gatatattttggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacatt |
227 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
22526311 |
gatatatttgggaaagtaggctaacaaaaaaactgggagttagatcgtcaacataaagattcctactaaacatt |
22526238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 19713670 - 19713602
Alignment:
| Q |
164 |
ggaatgtaggctaacaaagaaacatagagttagattattaacttaaagattcctactaaacattgatgt |
232 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||| || ||| ||| |||||||||||||||||||||| |
|
|
| T |
19713670 |
ggaaagtaggctaacaaagatacttggagttagaataacaacctaaggattcctactaaacattgatgt |
19713602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 22526408 - 22526339
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaa |
80 |
Q |
| |
|
|||||| || ||||| |||||||| ||||| |||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
22526408 |
tggtcacgacattttcccactccattcgtcgcatgaatgtaccttgctgtaaatcagagacaattctaaa |
22526339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 23389 - 23609
Alignment:
| Q |
12 |
ggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaattctaaacaagcagtcaacatcagattataaacacact |
111 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| | ||||||| | | |||| ||||||| |
|
|
| T |
23389 |
ggtcacgacatttttccactccagtcgtcacatgaatgtaccttcctacaagtttgaaacaattctaaatagtcagtcaagttaaagttattcacacact |
23488 |
T |
|
| Q |
112 |
ttgaggactttaagggttgtaatttgtcttagattaagagtagatatattt-tggaatgtaggctaacaaagaaacatagagttagattattaacttaaa |
210 |
Q |
| |
|
||||||||| |||||| ||| || ||||| ||||| || |||||||| ||| ||||||||| |||| ||| | ||||||| ||| |||| | |
|
|
| T |
23489 |
aggaggactttgagggttataacatggcttaggttaagggtgaatatatttcaagaaagtaggctaataaag-aacttggagttagtttactaaccaagg |
23587 |
T |
|
| Q |
211 |
gattcctactaaacattgatgt |
232 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
23588 |
gattcctactaaacattaatgt |
23609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 88199 - 88136
Alignment:
| Q |
11 |
tggtcatgatatttttccactccagtcgtcacatgaatgtaccttaatataaatttgagacaat |
74 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
88199 |
tggtcacgatatttgtccactccaatcgtcacatgaatgtactttgctgtaaatttgagacaat |
88136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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