View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_347 (Length: 243)
Name: NF9839A_low_347
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_347 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 1410914 - 1411136
Alignment:
| Q |
14 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
113 |
Q |
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| T |
1410914 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
1411013 |
T |
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| Q |
114 |
taactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
213 |
Q |
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| T |
1411014 |
taactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
1411113 |
T |
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| Q |
214 |
agagcttctgatgtccatctcat |
236 |
Q |
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||||||||||||| || |||||| |
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| T |
1411114 |
agagcttctgatggccgtctcat |
1411136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 1414366 - 1414512
Alignment:
| Q |
90 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaata |
189 |
Q |
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| T |
1414366 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
1414465 |
T |
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| Q |
190 |
agcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
236 |
Q |
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| T |
1414466 |
agcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1414512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 1419917 - 1420058
Alignment:
| Q |
92 |
aatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataag |
191 |
Q |
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| T |
1419917 |
aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag |
1420016 |
T |
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| Q |
192 |
cttctttggaaacatatcaggaagagcttctgatgtccatctcat |
236 |
Q |
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| T |
1420017 |
---ctttggaaacatatcagggagagcttctgatggccgtctcat |
1420058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
| Q |
91 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
190 |
Q |
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||||||| ||||||||||||||| || |||||||| |||||||| ||||||||| | | | |||||| || ||||| |||| ||||||| || |||| |
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| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
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| Q |
191 |
gcttctttggaaacatatcaggaagagcttctgatg |
226 |
Q |
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| T |
1408209 |
gctactttggaagcaccacaggaagagcttctgatg |
1408244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 1419863 - 1419912
Alignment:
| Q |
14 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt |
63 |
Q |
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| T |
1419863 |
tttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt |
1419912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 1414314 - 1414365
Alignment:
| Q |
14 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
65 |
Q |
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| T |
1414314 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
1414365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
91 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
190 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| | ||| |||| | |||||| || |||| |
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| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
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| Q |
191 |
gcttctttggaaacatatcaggaaga |
216 |
Q |
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| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
91 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
190 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| ||| |||| | | |||||| || |||| |
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| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
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| Q |
191 |
gcttctttggaaacatatcaggaaga |
216 |
Q |
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| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
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