View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_348 (Length: 243)
Name: NF9839A_low_348
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_348 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 38890893 - 38890662
Alignment:
| Q |
5 |
caccattatcatgtatttcccacaaaccaaaattaactattgattctaattcatgtattccaaaattcacaacaaagcttgacattgcacttgtattcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38890893 |
caccattatcatgtatttcccacaaaccaaaattaactattgattctaattcatgtattccaaaattcacaacaaagcttgacattgcacttgtattcat |
38890794 |
T |
|
| Q |
105 |
attgtaaatcacgcatcagacaaacttt-------catgtgagtcacaattgtcgtttaaatattcgtgtttattattggtcttccttttccatactatc |
197 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
38890793 |
attgtaaatcatgcatcaaacaaactttaaaaaaagatgtgagtcacaattgtcgtttaaatactcgtgtttattattggtcttccttttccatgatatc |
38890694 |
T |
|
| Q |
198 |
tcagttgataaagataatgcctgaaatatata |
229 |
Q |
| |
|
||||||| |||||| ||| | ||| ||||||| |
|
|
| T |
38890693 |
tcagttggtaaagacaatacatgatatatata |
38890662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University