View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_349 (Length: 243)
Name: NF9839A_low_349
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_349 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 35449889 - 35450016
Alignment:
| Q |
102 |
acgcaacattacggagtattacttttctcaaaatcccaaaaacgcgaaaaccttacagccatgaatcgtgcattatcatcattctccaaacactttacca |
201 |
Q |
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| T |
35449889 |
acgcaacattacggagtattacttttctcaaaatcccaaaaacgcgaaaaccttacagccatgaatcgtgcattatcatcattctccaaacactttacca |
35449988 |
T |
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| Q |
202 |
gaacaattcaccaaaccaaactccaaac |
229 |
Q |
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| T |
35449989 |
gaacaattcaccaaaccaaactccaaac |
35450016 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 35449809 - 35449876
Alignment:
| Q |
20 |
caactaaccacgtgttcttcaactctttcgtaaaccc-------aaaacaccatcactatattctaca |
80 |
Q |
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| T |
35449809 |
caactaaccacgtgttcttcaactctttcgtaaacccaaaacagaaaacaccatcactatattctaca |
35449876 |
T |
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