View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_35 (Length: 427)
Name: NF9839A_low_35
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 90 - 411
Target Start/End: Original strand, 14680006 - 14680331
Alignment:
| Q |
90 |
taacaacacattaacttatgattttcaatgcaaacttatgattataaacttaaataatattggataatgat----attcaagcaattcacaacatgttca |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14680006 |
taacaacacattaacttatgattttcaatgcaaacttatgattataaacttaaataatattggataatgatcgatattcaagcaattcacaacatgttca |
14680105 |
T |
|
| Q |
186 |
atcttaaactttattaaaaactatagagaaaaacatagtgaatcctaagcatttcaagtaactattacagtgaaaagttaaagtctctatattaagttag |
285 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14680106 |
atcttaaactttataaaaaactatagagaaaaacatagtgaatcctaagcttttcaagtaactattacagtgaaaagttaaagtctctatattaagttag |
14680205 |
T |
|
| Q |
286 |
tcactatcaaaaccttattcttcttctctacagtcttgaatcttgacattaatcttcacatcattgttacattcctgaataaaggagagagtagaggaga |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14680206 |
tcactatcaaaaccttattcttcttctctacagtcttgaatcttgacattaatcttcacatcattgttacattcctgaataaaggagagagtagaggaga |
14680305 |
T |
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| Q |
386 |
ctagggtttgcggccattatatttga |
411 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14680306 |
ctagggtttgcggccattatatttga |
14680331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Original strand, 14679741 - 14679771
Alignment:
| Q |
65 |
aggtaatgattaaaatggactttgataacaa |
95 |
Q |
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| T |
14679741 |
aggtaatgattaaaatggactttgataacaa |
14679771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 90 - 407
Target Start/End: Complemental strand, 17665324 - 17665007
Alignment:
| Q |
90 |
taacaacacattaacttatgattttcaatgcaaacttatgattataaacttaaataatattggataatgatattcaagcaattcacaacatgttcaatct |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17665324 |
taacaacacattaacttatgattttcaatgcaaacttatgattataaacttaaataatattggataatgatattcatgcaattcacaacatgttcaatct |
17665225 |
T |
|
| Q |
190 |
taaactttattaaaaactatagagaaaaacatagtgaatcctaagcatttcaagtaactattacagtgaaaagttaaagtctctatattaagttagtcac |
289 |
Q |
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| T |
17665224 |
taaactttataaaaaactatagagtaaaacatagtgaatcctaagcttttcaagtaactattacagtgaaaagttaaagtctctatattaagttagtcac |
17665125 |
T |
|
| Q |
290 |
tatcaaaaccttattcttcttctctacagtcttgaatcttgacattaatcttcacatcattgttacattcctgaataaaggagagagtagaggagactag |
389 |
Q |
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| T |
17665124 |
tatcaaaatcttattcttcttctctacaatcttgaatcttgacattaatcttcacatcattgttacattcctgaataaaggagagagtggaggagactag |
17665025 |
T |
|
| Q |
390 |
ggtttgcggccattatat |
407 |
Q |
| |
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|||||||||||||||||| |
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| T |
17665024 |
ggtttgcggccattatat |
17665007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 20243964 - 20244076
Alignment:
| Q |
256 |
tgaaaagttaaagtctctatattaagttagtcactatcaaaaccttattcttcttctctacagtcttgaatcttgacattaatcttcacatcattgttac |
355 |
Q |
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|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||| | | |
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| T |
20243964 |
tgaaaagttaaaatctttatgctaagttagtcactatcaaaaccttattcttcttctctaaaatcttgaatcttgacaataatcttcacattgttgctcc |
20244063 |
T |
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| Q |
356 |
attcctgaataaa |
368 |
Q |
| |
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|||||||||||| |
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| T |
20244064 |
tttcctgaataaa |
20244076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 20243279 - 20243365
Alignment:
| Q |
110 |
attttcaatgcaaacttatgattataaacttaaataatattggataatgatattcaagcaattcacaacatgttcaatcttaaactt |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||| | ||||||| |
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| T |
20243279 |
attttcaatgcaaacttatgattataaacttaaatagtattggataatgatagtcaaggaattcaaaacatgttcaaccctaaactt |
20243365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 13558412 - 13558368
Alignment:
| Q |
303 |
ttcttcttctctacagtcttgaatcttgacattaatcttcacatc |
347 |
Q |
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| T |
13558412 |
ttcttcttctctacaatcttgaatcttaacattaatcttgacatc |
13558368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 13558593 - 13558525
Alignment:
| Q |
113 |
ttcaatgcaaactt-atgattataaacttaaataatattggataatgatattcaagcaattcacaacat |
180 |
Q |
| |
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|||||||||||||| |||| ||||| | ||||| |||||||||||| || |||||||||||| ||||| |
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| T |
13558593 |
ttcaatgcaaactttatgaacataaagtgaaatagtattggataatggtaatcaagcaattcaaaacat |
13558525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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