View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_350 (Length: 243)
Name: NF9839A_low_350
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_350 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 50222154 - 50221949
Alignment:
| Q |
25 |
cttcgacattctctcaaatggatttatttctagtcctattgtgtcttctataaccaccacaaatcgtagtatcattttcatctctagaacatcgagttta |
124 |
Q |
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| T |
50222154 |
cttcgactttctctcaaatggatttatttctagtcctattgtgtcttctataaccaccacaaatcgtagtatcattttcatctccagaacatcgagttta |
50222055 |
T |
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| Q |
125 |
cattttgttgaaactttaactttcagttgtattcaacaaatgaaagagttgcaaccatgcagttgagtttttcattaaaaagaccttaagcatttattca |
224 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222054 |
cattttgttgaaactttaactttcagttgtattcagcaaatgaaagagttgcaaccatgcagttgagtttttcattaaaaagaccttaagcatttattca |
50221955 |
T |
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| Q |
225 |
tctcag |
230 |
Q |
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| |||| |
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| T |
50221954 |
tttcag |
50221949 |
T |
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