View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_355 (Length: 242)

Name: NF9839A_low_355
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_355
NF9839A_low_355
[»] chr2 (12 HSPs)
chr2 (1-231)||(28105355-28105591)
chr2 (1-224)||(27967147-27967368)
chr2 (1-149)||(10848699-10848844)
chr2 (1-87)||(9080043-9080126)
chr2 (1-110)||(10860639-10860748)
chr2 (1-51)||(10474163-10474213)
chr2 (172-224)||(6099517-6099569)
chr2 (171-213)||(13747643-13747685)
chr2 (171-224)||(26176324-26176377)
chr2 (171-224)||(26482117-26482170)
chr2 (172-228)||(8192474-8192530)
chr2 (2-88)||(10545117-10545200)
[»] chr8 (1 HSPs)
chr8 (171-224)||(40136961-40137014)
[»] chr4 (6 HSPs)
chr4 (171-224)||(37980146-37980199)
chr4 (171-224)||(56409975-56410028)
chr4 (171-224)||(17701899-17701952)
chr4 (171-212)||(21344841-21344882)
chr4 (171-227)||(29195119-29195175)
chr4 (171-222)||(37455593-37455645)
[»] chr5 (5 HSPs)
chr5 (1-41)||(33602568-33602608)
chr5 (172-222)||(15485420-15485470)
chr5 (171-224)||(16172982-16173035)
chr5 (171-224)||(31669023-31669076)
chr5 (171-231)||(14656635-14656695)
[»] chr1 (5 HSPs)
chr1 (171-222)||(37047009-37047060)
chr1 (171-228)||(39964529-39964586)
chr1 (171-212)||(41470621-41470662)
chr1 (173-228)||(10526849-10526905)
chr1 (172-224)||(38939227-38939279)
[»] chr6 (2 HSPs)
chr6 (171-213)||(6384012-6384054)
chr6 (171-227)||(20863399-20863456)
[»] chr3 (5 HSPs)
chr3 (171-209)||(30852168-30852206)
chr3 (171-213)||(42799757-42799799)
chr3 (171-212)||(35623277-35623318)
chr3 (171-228)||(53863862-53863919)
chr3 (170-222)||(34844394-34844446)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 28105355 - 28105591
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaattcatatttgcattt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28105355 agggccaccatagcacggaagtttataccagtattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaattcatatttgcattt 28105454  T
Q  101 tgtgttgtatacttgtatgttc------tctttaactttgaattcatatgtgcattgtctaccttttctttcttcttgttggcttgggaccttcgattat 194  Q
    ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  28105455 tgtgttgtatacttgtatgttctctttttctttaactttgaattcatatgtgcattgtctaccttttctttcttcttgttggcttgggaccttggattgt 28105554  T
Q  195 gctcctctcaaggtctcagattagattctctctgatg 231  Q
     ||| ||||||||||||||||||||||||||||||||    
T  28105555 actcttctcaaggtctcagattagattctctctgatg 28105591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27967368 - 27967147
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaattcatatttgcattt 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967368 agggccaccatagcacacaagtttataccagcattcatgggtaattctttccaatataataaggtaatagttgaattaccttgaattcatatttgcattt 27967269  T
Q  101 tgtgttgtatacttgtatgttctctttaactttgaattcatatgtgcattgtctaccttttctttcttcttgttggcttgggaccttcgattatgctcct 200  Q
    |||||| |||  || | | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||   |||||| |||| ||||||     
T  27967268 tgtgttttat-gttctct-ttttctttaactttaaattcatatgtgcactgtctaccttttctttcttcttgttggctcaagaccttggattgtgctccc 27967171  T
Q  201 ctcaaggtctcagattagattctc 224  Q
    ||||||||||||| ||||||||||    
T  27967170 ctcaaggtctcagtttagattctc 27967147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10848844 - 10848699
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaattcatatttgcattt 100  Q
    ||||||||||||||||  || |||||||||| |||||||||| |||||||| |||||||||||||||  ||||||| ||||||||||||||| ||||||     
T  10848844 agggccaccatagcacacaaatttataccagtattcatgggtgatgctttcaaatataataaggtaaacgttgaatcaccttgaattcatatgtgcattc 10848745  T
Q  101 tgtgttgtatacttgtatgttctctttaactttgaattcatatgtgcat 149  Q
    |||||||||| |   | | || |||||||| ||||||||||||||||||    
T  10848744 tgtgttgtatgc---tcttttttctttaaccttgaattcatatgtgcat 10848699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9080043 - 9080126
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaatt 87  Q
    ||||||||||||||   |||||||||||||| ||||||||| | ||||| | |||   |||||||||| ||||||||||||||||||    
T  9080043 agggccaccatagcggagaagtttataccagtattcatgggaagtgcttacaaat---ataaggtaattgttgaattaccttgaatt 9080126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10860748 - 10860639
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggt---aatgctttccaatataataaggtaatagttgaattaccttgaattcatatttgca 97  Q
    |||| ||||||||||||||| |||||||||| ||||||||||    |||||||| |||   |||||||||   ||||||||||||||||||| || ||||    
T  10860748 agggtcaccatagcacggaaatttataccagtattcatgggtggctatgctttcaaat---ataaggtaaccattgaattaccttgaattcacatgtgca 10860652  T
Q  98 ttttgtgttgtat 110  Q
    || | ||||||||    
T  10860651 ttctttgttgtat 10860639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10474213 - 10474163
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatgggtaatgctttc 51  Q
    ||||||||||||||||||||||||||||||  ||||||||| | |||||||    
T  10474213 agggccaccatagcacggaagtttataccaatattcatgggcagtgctttc 10474163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 6099569 - 6099517
Alignment:
Q  172 gttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    |||||||||||||||| || | |||||||||||||||||||| || |||||||    
T  6099569 gttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctc 6099517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 13747685 - 13747643
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcag 213  Q
    ||||||||||||||||| || |||||||||| |||||||||||    
T  13747685 tgttggcttgggaccttggagtatgctcctcccaaggtctcag 13747643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 26176377 - 26176324
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||| ||||||||||| |  | ||||||||||||||||||||||| |||||||    
T  26176377 tgttgacttgggaccttggggtgtgctcctctcaaggtctcagattcgattctc 26176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 26482117 - 26482170
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||||||||||||||  || | |||||||||||||||||||| || |||||||    
T  26482117 tgttggcttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctc 26482170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 8192530 - 8192474
Alignment:
Q  172 gttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctctctg 228  Q
    |||||||||||| ||| || | |||||||||||||||||||| || ||||| |||||    
T  8192530 gttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctg 8192474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 10545200 - 10545117
Alignment:
Q  2 gggccaccatagcacggaagtttataccagcattcatgggtaatgctttccaatataataaggtaatagttgaattaccttgaattc 88  Q
    ||||||||||||||||||| |||||||||   |||||||| | |||||||  ||   |||||||||  ||| |||||||||||||||    
T  10545200 gggccaccatagcacggaaatttataccatttttcatgggcagtgctttcagat---ataaggtaactgttaaattaccttgaattc 10545117  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 40137014 - 40136961
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||||||||||||||| || | |||||||||||||||||||| || |||||||    
T  40137014 tgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattctc 40136961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 37980199 - 37980146
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||||||||||||||| || | |||||||||||||||||||| || |||||||    
T  37980199 tgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctc 37980146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 56409975 - 56410028
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||||||||||||||| || | |||||||||||||||||||| || |||||||    
T  56409975 tgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctc 56410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 17701899 - 17701952
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    |||||||||| ||| || || | ||||||||||||||||||||||| |||||||    
T  17701899 tgttggcttgagactttggaatgtgctcctctcaaggtctcagattcgattctc 17701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 21344841 - 21344882
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctca 212  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  21344841 tgttggcttgggaccttggagtgtgctcctctcaaggtctca 21344882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 29195119 - 29195175
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctctct 227  Q
    ||||||||||||||||| || | |||||||||||||||| ||  || ||||||||||    
T  29195119 tgttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctct 29195175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 37455593 - 37455645
Alignment:
Q  171 tgttggcttgggaccttcg-attatgctcctctcaaggtctcagattagattc 222  Q
    ||||||||||||||||| | | |||||||||||||||||||||| || |||||    
T  37455593 tgttggcttgggacctttggagtatgctcctctcaaggtctcaggttcgattc 37455645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33602608 - 33602568
Alignment:
Q  1 agggccaccatagcacggaagtttataccagcattcatggg 41  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  33602608 agggccaccatagcacggaagtttataccattattcatggg 33602568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 15485470 - 15485420
Alignment:
Q  172 gttggcttgggaccttcgattatgctcctctcaaggtctcagattagattc 222  Q
    |||||||||||||||| || | |||||||||||||||||||| || |||||    
T  15485470 gttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattc 15485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 16173035 - 16172982
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    |||||||||| |||||| || | |||||||||||||||||||| || |||||||    
T  16173035 tgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattctc 16172982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 31669076 - 31669023
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    ||||||||||||||||| || | ||||||||||||||||| || || |||||||    
T  31669076 tgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattctc 31669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 14656695 - 14656635
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctctctgatg 231  Q
    |||||||||| |||||| || | |||||||||||||||||||| || |||| | |||||||    
T  14656695 tgttggcttgagaccttggagtttgctcctctcaaggtctcaggttcgattgtttctgatg 14656635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 37047009 - 37047060
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattc 222  Q
    ||||||||||||||||| || | |||||||||||||||||||| || |||||    
T  37047009 tgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattc 37047060  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 39964529 - 39964586
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctctctg 228  Q
    |||||||||| |||||| || | |||||||||||||||||||| || ||||| |||||    
T  39964529 tgttggcttgcgaccttggagtgtgctcctctcaaggtctcaggtttgattccctctg 39964586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 41470662 - 41470621
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctca 212  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  41470662 tgttggcttgagaccttggagtatgctcctctcaaggtctca 41470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 10526849 - 10526905
Alignment:
Q  173 ttggcttgggaccttcgattatgctcctc-tcaaggtctcagattagattctctctg 228  Q
    ||||||||||||||  || | |||||||| ||||||||||||||| |||||||||||    
T  10526849 ttggcttgggacctgggagtttgctcctcctcaaggtctcagattcgattctctctg 10526905  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 38939227 - 38939279
Alignment:
Q  172 gttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctc 224  Q
    |||||||||||||||| || | |||||||||||||||||| | || |||||||    
T  38939227 gttggcttgggaccttggagtgtgctcctctcaaggtctctggtttgattctc 38939279  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 6384054 - 6384012
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcag 213  Q
    ||||||||||||||||| || | ||||||||||||||||||||    
T  6384054 tgttggcttgggaccttggagtgtgctcctctcaaggtctcag 6384012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 20863399 - 20863456
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctc-tcaaggtctcagattagattctctct 227  Q
    |||||||||||||| || || | |||||||| ||||||||||||||| ||||||||||    
T  20863399 tgttggcttgggactttggagtgtgctcctcctcaaggtctcagatttgattctctct 20863456  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 30852206 - 30852168
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtc 209  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  30852206 tgttggcttgggaccttcgattttgctcctttcaaggtc 30852168  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 42799799 - 42799757
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcag 213  Q
    ||||||||||||||||| || | ||||||||||||||||||||    
T  42799799 tgttggcttgggaccttggagtgtgctcctctcaaggtctcag 42799757  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 35623318 - 35623277
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctca 212  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  35623318 tgttggcttgggaccttggagtgtgctcctctcaaggtctca 35623277  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 53863919 - 53863862
Alignment:
Q  171 tgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattctctctg 228  Q
    ||||||||||||||||| || | ||||||||||||||||| || ||  ||||||||||    
T  53863919 tgttggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctctctg 53863862  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 34844394 - 34844446
Alignment:
Q  170 ttgttggcttgggaccttcgattatgctcctctcaaggtctcagattagattc 222  Q
    ||||||||||| |||||| || | |||||||||||||||||||| || |||||    
T  34844394 ttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattc 34844446  T

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