View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_361 (Length: 242)
Name: NF9839A_low_361
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_361 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 18029249 - 18029049
Alignment:
| Q |
22 |
ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac |
121 |
Q |
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| T |
18029249 |
ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac |
18029150 |
T |
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| Q |
122 |
atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtc |
221 |
Q |
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| T |
18029149 |
atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtc |
18029050 |
T |
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| Q |
222 |
t |
222 |
Q |
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| T |
18029049 |
t |
18029049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 18035046 - 18034871
Alignment:
| Q |
22 |
ttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcac |
121 |
Q |
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| T |
18035046 |
ttgttacctgcattcttaaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctgaac |
18034947 |
T |
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| Q |
122 |
atgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaatt |
197 |
Q |
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| T |
18034946 |
aggtaccatgtttcatccattcatgtgaccaaagtctaataccatttccactagggcagctcaaagatggccaatt |
18034871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 18047695 - 18047613
Alignment:
| Q |
70 |
agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca |
152 |
Q |
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| T |
18047695 |
agtttgagagccgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgacca |
18047613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 18052678 - 18052596
Alignment:
| Q |
70 |
agtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgacca |
152 |
Q |
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| T |
18052678 |
agtttgagagctgtttgaaagtagtcatgttgagaaagcttagattctgaacatgtgccatgtttcatccattcatgtgacca |
18052596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 17999728 - 17999654
Alignment:
| Q |
82 |
gtttcaaagtactcatgttgatcaagctcagattctgcacatgtaccatgtttctcccattcatgtgaccagaat |
156 |
Q |
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| T |
17999728 |
gtttcaaaataatcatgttgcttaagaactgattctgaacaagtaccatgtttctcccattcatgtgtccagaat |
17999654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 3616899 - 3616803
Alignment:
| Q |
126 |
accatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaattcttctccatgttcttcattaggtct |
222 |
Q |
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| T |
3616899 |
accatgtttctcccattcatgtgactagaatctaaaacaattgctgcttggacagctcaaagatggtcaattcttctacatgttcttaattaggtct |
3616803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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