View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_363 (Length: 241)
Name: NF9839A_low_363
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_363 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 26975521 - 26975725
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
26975521 |
gaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggact |
26975620 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26975621 |
caaatctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
26975720 |
T |
|
| Q |
216 |
acact |
220 |
Q |
| |
|
||||| |
|
|
| T |
26975721 |
acact |
26975725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26636216 - 26636416
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26636216 |
gaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggact |
26636315 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||| |
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|
| T |
26636316 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagaca |
26636415 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
|
|
| T |
26636416 |
a |
26636416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26742182 - 26742382
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26742182 |
gaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggact |
26742281 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
26742282 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaagaca |
26742381 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
|
|
| T |
26742382 |
a |
26742382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 26950313 - 26950517
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26950313 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggact |
26950412 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||| || | |||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26950413 |
caaatctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaagaca |
26950512 |
T |
|
| Q |
216 |
acact |
220 |
Q |
| |
|
||||| |
|
|
| T |
26950513 |
acact |
26950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 26959696 - 26959900
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| || |
|
|
| T |
26959696 |
gaaatgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtct |
26959795 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||| ||||| || | |||||||||| ||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
26959796 |
caaatctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaagaca |
26959895 |
T |
|
| Q |
216 |
acact |
220 |
Q |
| |
|
||||| |
|
|
| T |
26959896 |
acact |
26959900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 26849282 - 26849486
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||||| |||||| | ||||||||||||||||| |||||||| |
|
|
| T |
26849282 |
gaaatgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttggact |
26849381 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||| | ||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
26849382 |
taaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaaaca |
26849481 |
T |
|
| Q |
216 |
acact |
220 |
Q |
| |
|
||||| |
|
|
| T |
26849482 |
acact |
26849486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 27664797 - 27664613
Alignment:
| Q |
36 |
tttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaaatctcgaatatcagaag |
135 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
27664797 |
tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag |
27664698 |
T |
|
| Q |
136 |
tgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact |
220 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27664697 |
tgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaagacaacact |
27664613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 25074440 - 25074638
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||||||| |||||||||| ||||| || |
|
|
| T |
25074440 |
gaaatgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtct |
25074539 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| | || ||||||| | ||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
25074540 |
tcgatctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaagaca |
25074636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 31288876 - 31288986
Alignment:
| Q |
17 |
aaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactc |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| ||| |
|
|
| T |
31288876 |
aaatgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctc |
31288975 |
T |
|
| Q |
117 |
aaatctcgaat |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
31288976 |
aaatctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 31288986 - 31289042
Alignment:
| Q |
164 |
tgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact |
220 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
31288986 |
tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacact |
31289042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 17992827 - 17992626
Alignment:
| Q |
16 |
gaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggact |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| |||||||| |||| || |
|
|
| T |
17992827 |
gaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtct |
17992728 |
T |
|
| Q |
116 |
caaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaagaca |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| | || |||||| |||| |||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
17992727 |
caaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaagaca |
17992628 |
T |
|
| Q |
216 |
ac |
217 |
Q |
| |
|
|| |
|
|
| T |
17992627 |
ac |
17992626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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