View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_365 (Length: 241)
Name: NF9839A_low_365
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_365 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 40590553 - 40590749
Alignment:
| Q |
24 |
aaattattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccg |
123 |
Q |
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| T |
40590553 |
aaattattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccg |
40590652 |
T |
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| Q |
124 |
aaaggacatgagggagacagaaagatgaatggcacaaaatgcaatccaaaatcaaggaaagatatcatctatatcattgcattgagtgagtacaact |
220 |
Q |
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| T |
40590653 |
aaaggacatgagggagacggaaagatgaatggcacaaaatgcaatccaaaatcaaggaaagatatcatctatatcattgcattgagtgagtacaact |
40590749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 40578608 - 40578795
Alignment:
| Q |
32 |
ctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaaaggaca |
131 |
Q |
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| T |
40578608 |
ctttagatgttgatgaatgcaaggaatccaattactgttttgagggggcgacatgcatcaatcttcctggaagctaccattgtttatgcccaaaaggata |
40578707 |
T |
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| Q |
132 |
tgagggagac--agaaagatgaatggcacaaaatgcaatccaaaatcaaggaaagatatcatctatatcattgcattgagtgagtacaac |
219 |
Q |
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| T |
40578708 |
tgaaggagacggaaaaagatgca--gtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaac |
40578795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 40596745 - 40596859
Alignment:
| Q |
32 |
ctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaaaggaca |
131 |
Q |
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| T |
40596745 |
ctttagatgttgatgaatgcaaggaatccaatgactgttttaagggggcgacatgcaccaatcttcctggaagttaccattgtttatgcccaaaaggata |
40596844 |
T |
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| Q |
132 |
tgagggagacagaaa |
146 |
Q |
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| T |
40596845 |
tgaaggagacggaaa |
40596859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 40567560 - 40567677
Alignment:
| Q |
24 |
aaattattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccg |
123 |
Q |
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| T |
40567560 |
aaattattctctagatattaatgaatgcatggaatccaacaattgtgttgatggggcaacatgcatcaactttcctggaagctatcactgtttatgcccg |
40567659 |
T |
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| Q |
124 |
aaaggacatgagggagac |
141 |
Q |
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| T |
40567660 |
gaaggatatgaaggagac |
40567677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 40572184 - 40572264
Alignment:
| Q |
61 |
aatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaaaggacatgagggagac |
141 |
Q |
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| T |
40572184 |
aatgattgtgttgaggaggcaacatgcatcgatcttcctgggagctaccattgtttatgcccagaaggatatgagggagac |
40572264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 40601143 - 40601258
Alignment:
| Q |
26 |
attattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaa |
125 |
Q |
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| T |
40601143 |
attatcctttagatgttaatgattgcatggaatccaattactgtgttgaggaggcgagatgcatcaatcatcccggaagctaccattgttcatgcccaga |
40601242 |
T |
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| Q |
126 |
aggacatgagggagac |
141 |
Q |
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| T |
40601243 |
aggatatgagggagac |
40601258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 2016192 - 2016040
Alignment:
| Q |
24 |
aaattattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccg |
123 |
Q |
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||||||| ||||||||||||||||||| | |||||| |||||||||||| | || ||||||||| ||||||||||||||||||||| |||||||| ||| |
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| T |
2016192 |
aaattatcctttagatattaatgaatgtatggagtccaatgactgtgttgaggaagcaacatgcaccaatcttcctggaagctaccagtgtttatgtccg |
2016093 |
T |
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| Q |
124 |
aaaggacatgagggagacagaaagatgaatggcacaaaatgcaatccaaaatc |
176 |
Q |
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|| | |||||||| || | ||||||||||| |||||||||| ||||||||| |
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| T |
2016092 |
gcagaatatgagggaaacgggaagatgaatggaacaaaatgcagtccaaaatc |
2016040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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