View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_368 (Length: 240)
Name: NF9839A_low_368
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_368 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 36904015 - 36904218
Alignment:
| Q |
16 |
aagaatatctacaaaatttcaaacgatgaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaaa |
115 |
Q |
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| T |
36904015 |
aagaatatctacaaaatttcaaacgataaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaaa |
36904114 |
T |
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| Q |
116 |
agaaaacaagaacatatactgaaatataatggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaacccta |
215 |
Q |
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| T |
36904115 |
agaaaacaagaacatatactgaaatataacggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaacccca |
36904214 |
T |
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| Q |
216 |
aaaa |
219 |
Q |
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|||| |
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| T |
36904215 |
aaaa |
36904218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 37073847 - 37073736
Alignment:
| Q |
63 |
aaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaa-aagaaaacaagaacatatactgaaatataatggccttataaggcaaa |
161 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||||| |
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| T |
37073847 |
aaacaaagcaatggaaataatagaagattgtatgctcatatagtaaaagaaagaagaaagcaagaacatctactcaaatataatggcct--taaggcaag |
37073750 |
T |
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| Q |
162 |
ctaaagcgattgtt |
175 |
Q |
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||||| |||||||| |
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| T |
37073749 |
ctaaatcgattgtt |
37073736 |
T |
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