View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_37 (Length: 425)
Name: NF9839A_low_37
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 7882830 - 7882419
Alignment:
| Q |
14 |
acatcatgagagaaccagcagctaaggccaaagtggaagtaagctaagggtaaggcaaagcattcaaaactttcttgttgtatatgttgcaaacaacatt |
113 |
Q |
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| T |
7882830 |
acatcatgagagaaccagcagctaaggacaaagtggaagtaagccaagggtaaggaaaagcattcaaaactttcttgttgtatatgttgaaaacaacatt |
7882731 |
T |
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| Q |
114 |
caaagcacaccaagtagcaaaatacaatccaatcttaagcttttgagctgcttcttcactaggaagttcaatgttaatctctagtggtcttgatctatca |
213 |
Q |
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| T |
7882730 |
caaagcccaccaagtagcaaaatacaatccaatcttaagcttttgagctgcttcttcactaggaagttcaatgttaatctctagtggtcttgatctatca |
7882631 |
T |
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| Q |
214 |
gcctcataggcttgacattctgtcacattctttcttttgggttttgttagcaatgcaaaattttgagtggatgaaaggtagagaggtttcttggaagaga |
313 |
Q |
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| T |
7882630 |
gcctcataggcttgacattctgtcacattctttcttttgggttttgttagcaatgcaaaattttgagtggatgaaaggtagagaggtttcttggaagaga |
7882531 |
T |
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| Q |
314 |
gtaaatggagactcatgttttgttcaacattttgaatggttggtagaattgaaaattgagaccttggaagtggaagctttgtgcttgtgaaattagagct |
413 |
Q |
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| T |
7882530 |
gtaaagggagactcatgttttgttcaacattttgaatggttggtagaattgaaaattgagaccttggaagtggaagctttgtgcttgtgaaattagagct |
7882431 |
T |
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| Q |
414 |
ggagaatgatga |
425 |
Q |
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| T |
7882430 |
ggtgaacgatga |
7882419 |
T |
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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 54984944 - 54984783
Alignment:
| Q |
5 |
atgagatggacatcatgagagaaccagcagctaaggccaaagtggaagtaagctaagggtaaggcaaagcattcaaaactttcttgttgtatatgttgca |
104 |
Q |
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||||||| |||| ||||||||||||||||| | || |||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| || ||| | |
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| T |
54984944 |
atgagattaacatgatgagagaaccagcagcaagggacaaagtggaagtaagccaaggataaggaaaagcattcaaaaccttcttgttgtaaatattgaa |
54984845 |
T |
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| Q |
105 |
aacaacattcaaagcacaccaagtagcaaaatacaatccaatcttaagcttttgagctgctt |
166 |
Q |
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| T |
54984844 |
aaccacattcaaagcccaccatgttgcaaaatacaaaccaattttgagtttttgagctgctt |
54984783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 18395198 - 18395113
Alignment:
| Q |
52 |
gtaagctaagggtaaggcaaagcattcaaaactttcttgttgtatatgttgcaaacaacattcaaagcacaccaagtagcaaaata |
137 |
Q |
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| T |
18395198 |
gtaagccaagggtaagggtaagcattcaaaaccttcttgttgtaaatattaaacacaacattcaaagcccaccaagttgcaaaata |
18395113 |
T |
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