View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_371 (Length: 239)
Name: NF9839A_low_371
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_371 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 45451044 - 45451263
Alignment:
| Q |
1 |
aaattaaaaagatttgcaaaagccaagtgactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcctcccaacccaaaagc |
100 |
Q |
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| T |
45451044 |
aaattaagaagatttgcaaaagccaagtaactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtacctcccaacccaaaagc |
45451143 |
T |
|
| Q |
101 |
cactaaagtgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaaacacaaatcaacaagcagaataacaagtaacattgtag |
200 |
Q |
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| T |
45451144 |
cactaaattgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacagaaaacacaaatcaacaagcagaataacaagtaacattgtag |
45451243 |
T |
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| Q |
201 |
attggcaaattgggtatgat |
220 |
Q |
| |
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||||||||||||||| |||| |
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| T |
45451244 |
attggcaaattgggtctgat |
45451263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 6453864 - 6453685
Alignment:
| Q |
9 |
aagatttgcaaaagccaagtgactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcctcccaacccaaaagccactaaag |
108 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6453864 |
aagatttgcaaaagccaagtaactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcctcccaacccaaaagccactaaag |
6453765 |
T |
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| Q |
109 |
tgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaaacacaaatcaacaagcagaataacaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6453764 |
tgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaagcacaaatcaacaagcagaataacaa |
6453685 |
T |
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