View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_373 (Length: 239)
Name: NF9839A_low_373
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_373 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 12423144 - 12422946
Alignment:
| Q |
16 |
tggtgttgccaaaaacatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
115 |
Q |
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||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12423144 |
tggtggtgccagaaacatcaacaagatcatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
12423045 |
T |
|
| Q |
116 |
tgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
214 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12423044 |
tgattccaatacttgtttcctcgctcaccatcaccagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
12422946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 8719559 - 8719361
Alignment:
| Q |
16 |
tggtgttgccaaaaacatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
115 |
Q |
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||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719559 |
tggtggtgccagaaacatcaacaagatcatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
8719460 |
T |
|
| Q |
116 |
tgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
214 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719459 |
tgattccaatacttgtttcctcgctcaccatcaccagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
8719361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 38460543 - 38460345
Alignment:
| Q |
16 |
tggtgttgccaaaaacatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
115 |
Q |
| |
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||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38460543 |
tggtggtgccagaaacttcaacaagatcatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
38460444 |
T |
|
| Q |
116 |
tgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
214 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38460443 |
tgattccaatacttgtttcctcgctcaccatcaccagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
38460345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 38459613 - 38459811
Alignment:
| Q |
16 |
tggtgttgccaaaaacatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
115 |
Q |
| |
|
||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38459613 |
tggtggtgccagaaacttcaacaagatcatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
38459712 |
T |
|
| Q |
116 |
tgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
214 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38459713 |
tgattccaatacttgtttcctcgctcaccatcaccagattcaacacgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
38459811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 30626675 - 30626873
Alignment:
| Q |
16 |
tggtgttgccaaaaacatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
115 |
Q |
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|
||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30626675 |
tggtggtgccagaaacatcaacaagatcatcctccttgaaatttaacggcaccgacctaagaagaccactaaaatgtcatcatccccaattcgacatcca |
30626774 |
T |
|
| Q |
116 |
tgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30626775 |
agattccaatacttgtttcctcgctcaccatcaccagattcaacatgattctcttttctttctttatttcattttgcaattacacaaattgagaggagg |
30626873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 34149913 - 34149794
Alignment:
| Q |
85 |
taaaatgtcatcatccccaattcgacatccatgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttattt |
184 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||||||||||| | |||||||||| || |||||||||||| || ||| ||| |
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| T |
34149913 |
taaaatgaaatcatccccaattcagtacccatgattccaatacttgtttccacactcaccatcacca---------tgattctctttttctt-tttcttt |
34149824 |
T |
|
| Q |
185 |
cattttgcaattacacaaattgagaggagg |
214 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
34149823 |
cattttgcaattacacaaattgagaagagg |
34149794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 34177211 - 34177330
Alignment:
| Q |
85 |
taaaatgtcatcatccccaattcgacatccatgattccaatacttgtttcctcgctcaccatcatcagattcaacatgattctcttttctttctttattt |
184 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||||||||||| | ||||||| ||| |||||||||||||| | | ||| ||| |
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| T |
34177211 |
taaaatgaaatcatccccaattcagtacccatgattccaatacttgtttccacactcacca---------tcaccatgattctctttt-tctttttcttt |
34177300 |
T |
|
| Q |
185 |
cattttgcaattacacaaattgagaggagg |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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|
| T |
34177301 |
cattttgcaattacacaaattgagaagagg |
34177330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 31279094 - 31279146
Alignment:
| Q |
30 |
acatcaacaagattatcctccttgaaaattaacggcaccgacctaagaagacc |
82 |
Q |
| |
|
|||||||||| || ||| |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
31279094 |
acatcaacaacatcatcttccttgaaaagtaacgacatcgacctaagaagacc |
31279146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 37657422 - 37657390
Alignment:
| Q |
182 |
tttcattttgcaattacacaaattgagaggagg |
214 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
37657422 |
tttcattttgcaattacacaaattgagaagagg |
37657390 |
T |
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