View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_375 (Length: 238)
Name: NF9839A_low_375
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_375 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10598006 - 10598216
Alignment:
| Q |
1 |
gactaatgcatctggaaatgtagaaagtgaagaacatgctgaaaacgaggaatgcattgaagaactcgcagtcagagtgctcgatgaagacgcggctata |
100 |
Q |
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||||||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
10598006 |
gactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaactcccagtcggagtgctcgatgaagagacggctata |
10598105 |
T |
|
| Q |
101 |
tctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtagtcattgaagaacttccagtcggagttctcgatgaagacacggctacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10598106 |
tctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagacacagctacat |
10598205 |
T |
|
| Q |
201 |
ctgaagagact |
211 |
Q |
| |
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||||||||||| |
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| T |
10598206 |
ctgaagagact |
10598216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 10598159 - 10598269
Alignment:
| Q |
55 |
cattgaagaactcgcagtcagagtgctcgatgaagacgcggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtagtc |
154 |
Q |
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|||||||||||| ||||| ||||||||||||||||| | |||| |||| ||||||| ||||||||||| | |||||||||||| |||||||||||| || |
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| T |
10598159 |
cattgaagaacttccagtcggagtgctcgatgaagacacagctacatctgaagagactaatacctctgaaaatgaagtacaagctggaaatgaggtattc |
10598258 |
T |
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| Q |
155 |
attgaagaact |
165 |
Q |
| |
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||| ||||||| |
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| T |
10598259 |
attaaagaact |
10598269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 53388635 - 53388845
Alignment:
| Q |
1 |
gactaatgcatctggaaatgtagaaagtgaagaacatgctgaaaacgaggaatgcattgaagaactcgcagtcagagtgctcgatgaagacgcggctata |
100 |
Q |
| |
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||||||| |||||| ||||||| |||||||| | || ||||||||||| || |||||||||||| | || |||| ||||||||||| ||||| | |
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| T |
53388635 |
gactaatacatctgaaaatgtactaagtgaagtaagtgatgaaaacgaggtattcattgaagaacttcccgttggagtaatcgatgaagacaaggctaca |
53388734 |
T |
|
| Q |
101 |
tctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtagtcattgaagaacttccagtcggagttctcgatgaagacacggctacat |
200 |
Q |
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||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||| |
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| T |
53388735 |
tctgaagagactaatacatctgagactgaagtacaagccggaaatgaggtattcattgaagaactcccagttggagtgctcgatgaagacacaactacat |
53388834 |
T |
|
| Q |
201 |
ctgaagagact |
211 |
Q |
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||||| ||||| |
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| T |
53388835 |
ctgaaaagact |
53388845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 53388788 - 53388890
Alignment:
| Q |
55 |
cattgaagaactcgcagtcagagtgctcgatgaagacgcggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtagtc |
154 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||| | ||| |||| || |||| |||||||||| | ||| ||||||||| ||||||||||| || |
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| T |
53388788 |
cattgaagaactcccagttggagtgctcgatgaagacacaactacatctgaaaagactaatacctctgtaaatgacgtacaagccagaaatgaggtactc |
53388887 |
T |
|
| Q |
155 |
att |
157 |
Q |
| |
|
||| |
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|
| T |
53388888 |
att |
53388890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 53388591 - 53388638
Alignment:
| Q |
164 |
cttccagtcggagttctcgatgaagacacggctacatctgaagagact |
211 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
53388591 |
cttccagtcggagtgctcgatgaatacacggctacatttgaagagact |
53388638 |
T |
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