View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_383 (Length: 236)
Name: NF9839A_low_383
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_383 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 20489450 - 20489586
Alignment:
| Q |
52 |
agatcccaccataattttgagagcttcaaagtcactcttt-aacaaattaaaagtaattgcttggagggtaatttcttttgactaggattgatttactat |
150 |
Q |
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| T |
20489450 |
agatcccaccataattttgagagcttcaaagtcactcttttaacaaattaaaagtaattgcttggagggtaatttcttttgactaggattgatttactat |
20489549 |
T |
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| Q |
151 |
ggcccattaatatctcactgcttcctctttaggttca |
187 |
Q |
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| T |
20489550 |
ggcccattaatatctcactgcttcctctttaggttca |
20489586 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 12341013 - 12340968
Alignment:
| Q |
182 |
ggttcaaatacattattttggcatgataggtggttaggtgatgtcc |
227 |
Q |
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| T |
12341013 |
ggttcaaatacattattttggcatgataggtggttaggtgatgtcc |
12340968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 36182983 - 36182938
Alignment:
| Q |
182 |
ggttcaaatacattattttggcatgataggtggttaggtgatgtcc |
227 |
Q |
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| T |
36182983 |
ggttcaaatagattgttttggcatgacaggtggttaggcgatgtcc |
36182938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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