View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_387 (Length: 235)
Name: NF9839A_low_387
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_387 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 15091117 - 15090889
Alignment:
| Q |
7 |
tggacatcatgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
106 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15091117 |
tggacatcgcgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttc |
15091018 |
T |
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| Q |
107 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
15091017 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
15090918 |
T |
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| Q |
207 |
acacactatcaacacttcaaattggcgtg |
235 |
Q |
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| T |
15090917 |
acacactgccaacactggaaattggcgtg |
15090889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 43010593 - 43010791
Alignment:
| Q |
31 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
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| Q |
131 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
230 |
Q |
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| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43010786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 35074796 - 35075024
Alignment:
| Q |
7 |
tggacatcatgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
106 |
Q |
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| T |
35074796 |
tggacatcgcgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttc |
35074895 |
T |
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| Q |
107 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaac |
206 |
Q |
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| T |
35074896 |
ataataacaaagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgttcgacaaaacaaaac |
35074995 |
T |
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| Q |
207 |
acacactatcaacacttcaaattggcgtg |
235 |
Q |
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| T |
35074996 |
acacactgccaacactggaaattggcgtg |
35075024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 43012890 - 43013088
Alignment:
| Q |
31 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
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| Q |
131 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
230 |
Q |
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| T |
43012990 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtgaaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43013083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 25203934 - 25203706
Alignment:
| Q |
7 |
tggacatcatgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
106 |
Q |
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|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
25203934 |
tggacatcgagaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttc |
25203835 |
T |
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| Q |
107 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaac |
206 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| || || |||||||||||| ||||||||||||| |
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| T |
25203834 |
gtaataacaaagacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgttagacaaaacaaaac |
25203735 |
T |
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| Q |
207 |
acacactatcaacacttcaaattggcgtg |
235 |
Q |
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|||||||| ||||| | ||||||||||| |
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| T |
25203734 |
acacactaccaacattggaaattggcgtg |
25203706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 25676775 - 25676577
Alignment:
| Q |
31 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
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| Q |
131 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacggggcatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
230 |
Q |
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|||||||||||||||||||||||||||| || | ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
25676582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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