View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_388 (Length: 235)

Name: NF9839A_low_388
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_388
NF9839A_low_388
[»] chr3 (11 HSPs)
chr3 (117-220)||(4655875-4655979)
chr3 (138-209)||(15046664-15046735)
chr3 (138-208)||(15956968-15957038)
chr3 (141-204)||(38278222-38278285)
chr3 (40-97)||(24901304-24901361)
chr3 (168-208)||(3294631-3294671)
chr3 (53-104)||(3294755-3294806)
chr3 (138-209)||(12774921-12774992)
chr3 (51-94)||(4655825-4655868)
chr3 (139-210)||(11822867-11822939)
chr3 (168-208)||(15855940-15855980)
[»] scaffold0077 (1 HSPs)
scaffold0077 (135-220)||(29689-29774)
[»] chr4 (2 HSPs)
chr4 (40-211)||(20597254-20597425)
chr4 (68-119)||(9197595-9197646)
[»] scaffold2073 (1 HSPs)
scaffold2073 (138-210)||(373-445)
[»] chr5 (6 HSPs)
chr5 (139-211)||(22447265-22447337)
chr5 (168-209)||(17362790-17362831)
chr5 (139-211)||(18225738-18225811)
chr5 (61-104)||(22949985-22950028)
chr5 (168-210)||(24192646-24192688)
chr5 (50-93)||(21311660-21311703)
[»] chr1 (5 HSPs)
chr1 (138-211)||(20406656-20406729)
chr1 (143-207)||(22613871-22613935)
chr1 (168-210)||(16674311-16674353)
chr1 (174-209)||(35565219-35565254)
chr1 (138-201)||(21417240-21417303)
[»] chr2 (7 HSPs)
chr2 (138-209)||(20509792-20509864)
chr2 (138-208)||(34898267-34898337)
chr2 (168-209)||(17739656-17739697)
chr2 (59-104)||(24280050-24280095)
chr2 (168-207)||(28773222-28773261)
chr2 (138-206)||(23781147-23781216)
chr2 (138-209)||(27402242-27402315)
[»] scaffold0018 (2 HSPs)
scaffold0018 (138-208)||(53149-53219)
scaffold0018 (138-208)||(57101-57171)
[»] chr7 (8 HSPs)
chr7 (138-209)||(13766878-13766949)
chr7 (140-209)||(26008571-26008640)
chr7 (139-210)||(11775495-11775567)
chr7 (40-96)||(16206767-16206823)
chr7 (150-211)||(18076507-18076569)
chr7 (174-211)||(15010566-15010603)
chr7 (140-211)||(16206882-16206954)
chr7 (146-209)||(20147206-20147271)
[»] chr6 (5 HSPs)
chr6 (145-211)||(15939542-15939609)
chr6 (147-210)||(19978946-19979009)
chr6 (154-209)||(19991712-19991768)
chr6 (142-207)||(22524246-22524311)
chr6 (174-210)||(9520300-9520336)
[»] scaffold0347 (1 HSPs)
scaffold0347 (50-96)||(4316-4362)
[»] scaffold0329 (1 HSPs)
scaffold0329 (138-211)||(1605-1679)
[»] chr8 (4 HSPs)
chr8 (168-209)||(17624393-17624434)
chr8 (155-209)||(22888651-22888706)
chr8 (59-100)||(17624490-17624531)
chr8 (168-208)||(24382890-24382930)
[»] scaffold0053 (1 HSPs)
scaffold0053 (168-208)||(76432-76472)
[»] scaffold0035 (1 HSPs)
scaffold0035 (66-104)||(34745-34783)
[»] scaffold1923 (1 HSPs)
scaffold1923 (66-103)||(1167-1204)
[»] scaffold0190 (1 HSPs)
scaffold0190 (168-209)||(543-584)
[»] scaffold0126 (1 HSPs)
scaffold0126 (181-209)||(17402-17430)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 4655875 - 4655979
Alignment:
Q  117 taattcacataattatccaatgcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtaccaagtca 215  Q
    ||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  4655875 taattcacataattcaccaatgcacataagcaagtatgacacctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtca 4655974  T
Q  216 acacc 220  Q
    |||||    
T  4655975 acacc 4655979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 15046735 - 15046664
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||    
T  15046735 gcacataagcaagtatgacacttgttaagttatgcaatgcgcctagacacaactctatatgcatgtggtacc 15046664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 15956968 - 15957038
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15956968 gcacataagcaagaatgacacctgtcaagttatgcaatgcgcctagacacgactctatatgcatgtggtac 15957038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 38278285 - 38278222
Alignment:
Q  141 cataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtg 204  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  38278285 cataagcaagtatgacacatgtcaagttatgcaatgcgcctagacacgactctctatgcatgtg 38278222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 24901361 - 24901304
Alignment:
Q  40 aagtatagcgaaacatcatcaagtacacaattcaccaagctcaccgatgcacataaat 97  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24901361 aagtataacaaaacatcatcaagtacacaattcaccaagttcaccaatgcacataaat 24901304  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 3294671 - 3294631
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  3294671 tatgcaatgcgcctagacacgactctatatgcatgtggtac 3294631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 3294806 - 3294755
Alignment:
Q  53 catcatcaagtacacaattcaccaagctcaccgatgcacataaatcaccaag 104  Q
    |||||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  3294806 catcatcaagtacacaattcaccaagttcaccaatgctcagaaatcaccaag 3294755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 12774992 - 12774921
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtacc 209  Q
    |||||||| ||| |||||||| | ||||| |||||||||||| || ||||||| |||||||||||||||||||    
T  12774992 gcacataa-caattatgacacatatcaagatatgcaatgcgcttaaacacgacttctatatgcatgtggtacc 12774921  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 4655825 - 4655868
Alignment:
Q  51 aacatcatcaagtacacaattcaccaagctcaccgatgcacata 94  Q
    |||||||||||||||||||||||||||| | || ||||||||||    
T  4655825 aacatcatcaagtacacaattcaccaagttaactgatgcacata 4655868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 11822867 - 11822939
Alignment:
Q  139 cacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactc-tatatgcatgtggtacca 210  Q
    ||||||| ||| || ||| | |||||| | ||||||||||| |||||||||||| || |||||||||||||||    
T  11822867 cacataaacaattaggactcatgtcaattcatgcaatgcgcctagacacgactcttacatgcatgtggtacca 11822939  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 15855940 - 15855980
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    |||| ||||| | ||||||||||||||||||||||||||||    
T  15855940 tatgtaatgcacctagacacgactctatatgcatgtggtac 15855980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 29774 - 29689
Alignment:
Q  135 aatgcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtaccaagtcaacacc 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  29774 aatgcacataagcaagtatgacacctgtcaagttatgcaatgcgcatagacacgactctatatgcacgtggtacgaagtcaacacc 29689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 20597425 - 20597254
Alignment:
Q  40 aagtatagcgaaacatcatcaagtacacaattcaccaagctcaccgatgcacataaatcaccaagcacataaacatataattcacataattatccaatgc 139  Q
    ||||||| | |||||| |||||||||||||||||||||| ||||||||||| |||||||| || |||||||  ||  |||||||||| |||  |||| |     
T  20597425 aagtataacaaaacattatcaagtacacaattcaccaagttcaccgatgcatataaatcatcatgcacatattcaactaattcacatgattcaccaa-gt 20597327  T
Q  140 acataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtaccaa 211  Q
    ||||||| || |||||| | |||||| | ||||||||||| || ||||||| ||||||||||||| |||||||    
T  20597326 acataagaaattatgactcatgtcaaatcatgcaatgcgcctatacacgacttctatatgcatgtcgtaccaa 20597254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 9197595 - 9197646
Alignment:
Q  68 aattcaccaagctcaccgatgcacataaatcaccaagcacataaacatataa 119  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  9197595 aattcaccaagttcaccaatgcacataaatcaccaagcacataaacaaataa 9197646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 373 - 445
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtacca 210  Q
    ||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  373 gcacataagaaggtatgacacctgtcaagttatgcaatgcgcctagacacgactctatatgcatgtggtacca 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 22447265 - 22447337
Alignment:
Q  139 cacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtaccaa 211  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||    
T  22447265 cacataagcaagtatgacacttgtcaagttttgcaatgtgcctagacacgagtctatatgcatgtggtaccaa 22447337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 17362790 - 17362831
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  17362790 tatgcaatgcgcctagacacgactctatatgcatgtggtacc 17362831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 18225811 - 18225738
Alignment:
Q  139 cacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtaccaa 211  Q
    ||||||||||| |||||| |  ||||| | ||||||||||| |||||||||| |||||||||||||||||||||    
T  18225811 cacataagcaattatgactcacgtcaaatcatgcaatgcgcctagacacgacttctatatgcatgtggtaccaa 18225738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 22949985 - 22950028
Alignment:
Q  61 agtacacaattcaccaagctcaccgatgcacataaatcaccaag 104  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  22949985 agtacacaattcaccaagttcaccaatgcacataaatcaccaag 22950028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 24192646 - 24192688
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacca 210  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  24192646 tatgcaacgcgcctagacacgactctatatgcatgtggtacca 24192688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 21311660 - 21311703
Alignment:
Q  50 aaacatcatcaagtacacaattcaccaagctcaccgatgcacat 93  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||    
T  21311660 aaacataatcaagtacacaattcaccaagttcaccaatgcacat 21311703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 20406656 - 20406729
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtaccaa 211  Q
    ||||| ||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  20406656 gcacacaagcaagtacgacacctgtcaagttatggaatgcgcctagacaggactctatatgcatgtggtaccaa 20406729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 22613871 - 22613935
Alignment:
Q  143 taagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggta 207  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  22613871 taagcaagtacgacacctgtcaagttatgcaatgcgcctagacacgactctatattcatgtggta 22613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 16674311 - 16674353
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacca 210  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  16674311 tatgtaatgcgcctagacacgactctatatgcatgtggtacca 16674353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 35565219 - 35565254
Alignment:
Q  174 atgcgcatagacacgactctatatgcatgtggtacc 209  Q
    |||||| |||||||||||||||||||||||||||||    
T  35565219 atgcgcctagacacgactctatatgcatgtggtacc 35565254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 21417240 - 21417303
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcat 201  Q
    |||||||| ||| |||||||| ||||||| |||||||||||| || ||||||| |||||||||||    
T  21417240 gcacataa-caattatgacacatgtcaagatatgcaatgcgcctaaacacgacttctatatgcat 21417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 20509792 - 20509864
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgca-tgtggtacc 209  Q
    |||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  20509792 gcacataagcaattataacacctgtcaagttatgcaatgcgcctagacacgactctatatgcattgtggtacc 20509864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 34898337 - 34898267
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    |||| |||||||||||||||| |||||||||||||||| ||  |||||| |||||||||||||||||||||    
T  34898337 gcacgtaagcaagtatgacacctgtcaagttatgcaatacgtctagacatgactctatatgcatgtggtac 34898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 17739656 - 17739697
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  17739656 tatgaaatgcgcctagacacgactctatatgcatgtggtacc 17739697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 24280050 - 24280095
Alignment:
Q  59 caagtacacaattcaccaagctcaccgatgcacataaatcaccaag 104  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||    
T  24280050 caagtacacaattcaccaagttcaccaatgcatataaatcaccaag 24280095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 28773222 - 28773261
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggta 207  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  28773222 tatgcaatgcgcctagacacgactctatatgcatttggta 28773261  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 23781216 - 23781147
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggt 206  Q
    |||||||| ||| |||||| | |||||| | ||||||||||| ||||||||||  |||||||||||||||    
T  23781216 gcacataaacaattatgactcatgtcaaatcatgcaatgcgcctagacacgacacctatatgcatgtggt 23781147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 27402242 - 27402315
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagt-tatgcaatgcgc-atagacacgactctatatgcatgtggtacc 209  Q
    |||||||||||||||||||||||  ||| | ||||||||| ||  ||||||||||||| ||| |||||||||||    
T  27402242 gcacataagcaagtatgacacttaacaaatgtatgcaatgtgctttagacacgactctctatacatgtggtacc 27402315  T

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Target: scaffold0018 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 53149 - 53219
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    ||||||||||||||||||||| ||||||| |||||||||||| || |||| |||||||||||||| |||||    
T  53149 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaactctatatgcatgcggtac 53219  T

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Target: scaffold0018; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 57101 - 57171
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    ||||||||||||||||||||| ||||||| |||||||||||| || |||| |||||||||||||| |||||    
T  57101 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaactctatatgcatgcggtac 57171  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 13766949 - 13766878
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    |||||||||||| |||||||||||| |||||||||||| |   |||||||||||||| ||||||||||||||    
T  13766949 gcacataagcaattatgacacttgttaagttatgcaatacatttagacacgactctacatgcatgtggtacc 13766878  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 26008640 - 26008571
Alignment:
Q  140 acataagcaagtatgacacttgtcaagttatgcaatgcgcata-gacacgactctatatgcatgtggtacc 209  Q
    ||||||||||||||||||| |||||| ||||||||||||| || ||||||||| |||||||||||||||||    
T  26008640 acataagcaagtatgacacctgtcaa-ttatgcaatgcgcctaagacacgactatatatgcatgtggtacc 26008571  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 11775567 - 11775495
Alignment:
Q  139 cacataagcaagtatgacacttgtcaagttatgcaatgcgcata-gacacgactctatatgcatgtggtacca 210  Q
    ||||||| |||||||||||| ||||||||||||||||| || || ||| | ||||||||||||||||| ||||    
T  11775567 cacataatcaagtatgacacctgtcaagttatgcaatgtgcctatgacccaactctatatgcatgtgggacca 11775495  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 16206767 - 16206823
Alignment:
Q  40 aagtatagcgaaacatcatcaagtacacaattcaccaagctcaccgatgcacataaa 96  Q
    ||||||| | ||||||||||||||||||||||||||||  ||||| |||||||||||    
T  16206767 aagtataacaaaacatcatcaagtacacaattcaccaatttcaccaatgcacataaa 16206823  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 18076507 - 18076569
Alignment:
Q  150 gtatgacacttgtcaagttatgcaatgcgcatagacacgactc-tatatgcatgtggtaccaa 211  Q
    ||||||||| |||||| |||||||||| || ||||| |||||| |||||||||||||||||||    
T  18076507 gtatgacacatgtcaaattatgcaatgtgcgtagacgcgactcctatatgcatgtggtaccaa 18076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 15010603 - 15010566
Alignment:
Q  174 atgcgcatagacacgactctatatgcatgtggtaccaa 211  Q
    |||| |||||||||||||||||||||||||||||||||    
T  15010603 atgcccatagacacgactctatatgcatgtggtaccaa 15010566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 16206882 - 16206954
Alignment:
Q  140 acataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtaccaa 211  Q
    |||||||||| |||||| | || ||| ||||||||||||| ||||||||||  | ||||||||||||||||||    
T  16206882 acataagcaattatgactcatgacaaattatgcaatgcgcctagacacgacaccaatatgcatgtggtaccaa 16206954  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 20147206 - 20147271
Alignment:
Q  146 gcaagtatgacacttgtcaagt-tatgcaatgcgca-tagacacgactctatatgcatgtggtacc 209  Q
    ||||||||||||||| |||| | ||||||||||||  |||||| ||||||||||||||| ||||||    
T  20147206 gcaagtatgacacttatcaaatgtatgcaatgcgctctagacatgactctatatgcatgcggtacc 20147271  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 15939609 - 15939542
Alignment:
Q  145 agcaagtatgacacttgtcaagttatgcaatgcgcatagacacgact-ctatatgcatgtggtaccaa 211  Q
    |||||||||||||| ||| || || |||||||||| ||||||||||| ||||||||||||||||||||    
T  15939609 agcaagtatgacacatgttaaattttgcaatgcgcctagacacgactcctatatgcatgtggtaccaa 15939542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 19978946 - 19979009
Alignment:
Q  147 caagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggtacca 210  Q
    ||||||| ||| | ||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  19978946 caagtataacattcgtcaagttatgcaatgcgtctagacacgacactatatgcatgtggtacca 19979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 19991768 - 19991712
Alignment:
Q  154 gacacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtacc 209  Q
    |||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||    
T  19991768 gacacttgtcaagttatgaaatgcgcctaaacacgacttctatatgcatgtggtacc 19991712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 22524311 - 22524246
Alignment:
Q  142 ataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgactctatatgcatgtggta 207  Q
    |||||||||||| ||| |||| |||||||||||||| | || |||| | |||||||||||||||||    
T  22524311 ataagcaagtataacatttgttaagttatgcaatgcacctatacacaaatctatatgcatgtggta 22524246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9520300 - 9520336
Alignment:
Q  174 atgcgcatagacacgactctatatgcatgtggtacca 210  Q
    |||||| |||||| |||||||||||||||||||||||    
T  9520300 atgcgcttagacatgactctatatgcatgtggtacca 9520336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 4316 - 4362
Alignment:
Q  50 aaacatcatcaagtacacaattcaccaagctcaccgatgcacataaa 96  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  4316 aaacatcatcaagtacacaattcaccaagttcaccaatgcacataaa 4362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 1605 - 1679
Alignment:
Q  138 gcacataagcaagtatgacacttgtcaagttatgcaatgcgcatagacacgact-ctatatgcatgtggtaccaa 211  Q
    |||||||||||| |||||| | |||||| | ||||||||||| |||||||||||  |||||||||||||||||||    
T  1605 gcacataagcaattatgactcatgtcaaatcatgcaatgcgcctagacacgactattatatgcatgtggtaccaa 1679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 17624434 - 17624393
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  17624434 tatgcaatgcgcttagacacgactctatatgcatgtggtacc 17624393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 22888651 - 22888706
Alignment:
Q  155 acacttgtcaagttatgcaatgcgcatagacacgac-tctatatgcatgtggtacc 209  Q
    ||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||    
T  22888651 acacttgtcaagttatgcaatgcccctagactcgacttctatatgcatgtggtacc 22888706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 17624531 - 17624490
Alignment:
Q  59 caagtacacaattcaccaagctcaccgatgcacataaatcac 100  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  17624531 caagtacacaattcaccaagttcaccaatgcacataaatcac 17624490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 24382890 - 24382930
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    |||||||| ||| ||||||||||||| ||||||||||||||    
T  24382890 tatgcaatacgcctagacacgactctctatgcatgtggtac 24382930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 76472 - 76432
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtac 208  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  76472 tatgctatgcgcctagacacgactctatatgcatgtggtac 76432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 34783 - 34745
Alignment:
Q  66 acaattcaccaagctcaccgatgcacataaatcaccaag 104  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  34783 acaattcaccaaactcaccaatgcacataaatcaccaag 34745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1923 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 1167 - 1204
Alignment:
Q  66 acaattcaccaagctcaccgatgcacataaatcaccaa 103  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  1167 acaattcaccaaactcaccaatgcacataaatcaccaa 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 543 - 584
Alignment:
Q  168 tatgcaatgcgcatagacacgactctatatgcatgtggtacc 209  Q
    ||||||||| || || ||||||||||||||||||||||||||    
T  543 tatgcaatgtgcctaaacacgactctatatgcatgtggtacc 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 17430 - 17402
Alignment:
Q  181 tagacacgactctatatgcatgtggtacc 209  Q
    |||||||||||||||||||||||||||||    
T  17430 tagacacgactctatatgcatgtggtacc 17402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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