View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_39 (Length: 423)
Name: NF9839A_low_39
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 19620965 - 19621378
Alignment:
| Q |
8 |
ggctggtctttagaggtggcggttatcacgtgacacagtttataatgtttgaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatga |
107 |
Q |
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| T |
19620965 |
ggctggtctttagaggtggcagttatcacctgacacggtttataatgttttaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatga |
19621064 |
T |
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| Q |
108 |
atatcgtcatataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtg |
207 |
Q |
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| T |
19621065 |
atatcgtcatataatttggaataaaacaatacctttaaaagtaacaatttttgtgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtg |
19621164 |
T |
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| Q |
208 |
cagcatgggaacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggca |
307 |
Q |
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| T |
19621165 |
cagcatgggaacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggca |
19621264 |
T |
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| Q |
308 |
gcatttggcctctggttgcaatgactgggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctcattgtgttggttctcta |
407 |
Q |
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| T |
19621265 |
gcatttggcctctggttgcaatgacttggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctcattgtgtgggttctcta |
19621364 |
T |
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| Q |
408 |
gacgaataaagtct |
421 |
Q |
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| T |
19621365 |
gatgaataaagtct |
19621378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 19615231 - 19615635
Alignment:
| Q |
17 |
ttagaggtggcggttatcacgtgacacagtttataatgtttgaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatgaatatcgtca |
116 |
Q |
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| T |
19615231 |
ttagaggtggcaatcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacgggagcagaacctcccaa-tcgtgatgaatatcacga |
19615329 |
T |
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| Q |
117 |
tataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtgcagcatggg |
216 |
Q |
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| T |
19615330 |
tataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtttctatttcggaatcgtattgcaatgaaagataatatgatgcagcatggg |
19615429 |
T |
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| Q |
217 |
aacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggcagcatttggc |
316 |
Q |
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| T |
19615430 |
atcatccaatcgaatcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcaatcattcgttctttgaatatagtcattttggcagcatttggt |
19615529 |
T |
|
| Q |
317 |
ctctgg--ttgcaatgactgggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctcattgtgttgg-ttctctagacgaa |
413 |
Q |
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|||||| |||||||| |||||||||| ||||||||||||||||||| | ||| |||||||||||||||||| || |||||| || ||||||||| ||| |
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| T |
19615530 |
ctctggttttgcaatggctgggtatttgttttgtgaactccattcatttgtttgggcatgtattaatgtttagttcgttgtgtgggtttctctagaagaa |
19615629 |
T |
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| Q |
414 |
taaagt |
419 |
Q |
| |
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|||||| |
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| T |
19615630 |
taaagt |
19615635 |
T |
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