View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_391 (Length: 234)
Name: NF9839A_low_391
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_391 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 31306549 - 31306346
Alignment:
| Q |
11 |
gatggacatcaaggaaagatatattgaataaacttacttgcagctgctccttagccatgtgttggctaacagatttctgcagagctcctgtgcaggatgc |
110 |
Q |
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| T |
31306549 |
gatggaaatcaaggaaagatatattgaataaacttacttgctgctgctccttagccatgtgttggctaacagatgtctgcagagctcctgtgcaggatgc |
31306450 |
T |
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| Q |
111 |
taactcccttcggaaactttcatcattgtcaccggaagagtttaaaagctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaatat |
210 |
Q |
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| T |
31306449 |
taactcccttcggaaactttcatcattgtcaccggaagagtttaaaagctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaatat |
31306350 |
T |
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| Q |
211 |
gtct |
214 |
Q |
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|||| |
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| T |
31306349 |
gtct |
31306346 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 43982790 - 43982639
Alignment:
| Q |
58 |
tccttagccatgtgttggctaacagatttctgcagagctcctgtgcaggatgctaactcccttcggaaactttcatcattgtcaccggaagagtttaaaa |
157 |
Q |
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| T |
43982790 |
tcctttgccaggtgttgactaactgatgtctgtaaagctcctgtgcaagatgccaattctcttggaaaaccctcatcattcttggtggaagaatttaaga |
43982691 |
T |
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| Q |
158 |
gctcaaataaatggtcaaagaggttgctttcccccttgtgttcaagagaata |
209 |
Q |
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| T |
43982690 |
gctcaaatagatgatcaaaaagattgctttcacccttgtgctcaagagaata |
43982639 |
T |
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