View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_394 (Length: 231)
Name: NF9839A_low_394
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_394 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 16161251 - 16161021
Alignment:
| Q |
1 |
tcaaccaacaatgtgaattataaacaaatggacaaactaataagaggatagtagtttaaatatggacctctaagagataaatggcgttgcataattttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16161251 |
tcaaccaacaatgtgaattataaacaaatggacaaactaataagaggatagtagtttaaatatggacctctaagagataaatggcgttgcataattttac |
16161152 |
T |
|
| Q |
101 |
ttcgatgaggttaacaaaaggaaagcaataaagaagatagagccacaaaaatataaatgtagatgtaaataaaaacactgctaaattaagcatacagtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
16161151 |
ttcgatgaggttaacaaaaggaaagcaataaagaagataaagccacaaaaatataaatgtagatgtaaataaaaacactgctaaattaagcatacggcgg |
16161052 |
T |
|
| Q |
201 |
agaataaggtggatttattccaaataacagg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16161051 |
agaataaggtggatttattccaaataacagg |
16161021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University