View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_400 (Length: 230)
Name: NF9839A_low_400
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_400 |
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| [»] chr3 (5 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0656 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0023 (2 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0013 (4 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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| [»] scaffold0362 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10782125 - 10782354
Alignment:
| Q |
1 |
aaagccacagccttacaagataccactaacattgataagatggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaattt |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
10782125 |
aaagccacagcctcacaagataccaccaacattgataagatggaggacaagcagaaagctgtgtttgagatggttaagaagccagcaacagagcgaattt |
10782224 |
T |
|
| Q |
101 |
cgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaa |
200 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10782225 |
cgcccccattgtcgattctgatgaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaa |
10782324 |
T |
|
| Q |
201 |
tgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10782325 |
tgtggtttccattttgcctgtggaatatga |
10782354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14693452 - 14693226
Alignment:
| Q |
1 |
aaagccacagccttacaagataccactaacattgataagatggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaattt |
100 |
Q |
| |
|
||||| ||||| ||||||| | ||| || ||||| || | ||||||||||||||||| ||||| || ||||||||||| ||||||| |||| |||||| |
|
|
| T |
14693452 |
aaagcaacagctctacaagacatcaccaatattgacaaaacggaggacaagcagaaagccgtgttcgaaatggttaaaaaaccagcaacagagagaattt |
14693353 |
T |
|
| Q |
101 |
cgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaa |
200 |
Q |
| |
|
| |||| |||||| || |||||||||| ||| | ||||| ||| |||| |||||||| |||||||| ||||||||||||| || ||||||||||| || |
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|
| T |
14693352 |
cacccccattgtcaatcttgaagaaagaccattccaaagaggataaggagatgacttcaaatttcacggaatctgacccaaacctcgacatagtttgcaa |
14693253 |
T |
|
| Q |
201 |
tgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||||| || |||||||||||||| |
|
|
| T |
14693252 |
tgtggtttctatcttgcctgtggaata |
14693226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 10150810 - 10150985
Alignment:
| Q |
55 |
aaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatga |
154 |
Q |
| |
|
|||| |||||| || ||||||||||| |||| | |||| |||| || |||| |||||| ||| |||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
10150810 |
aaagatgtgttcgaaatggttaaaaaaccagtcacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagaggatgaagaaatga |
10150909 |
T |
|
| Q |
155 |
cttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||| |||||||| | ||||||||| |||||||||||||| || ||||||||||| || | |||||||||||||| |
|
|
| T |
10150910 |
cttcaaatttcactggatctgaccccagtcttgacatagtatgcaatgtggtttctatactacctgtggaatatga |
10150985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 13307059 - 13306894
Alignment:
| Q |
44 |
aggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaaga |
143 |
Q |
| |
|
|||| ||||||||| |||||| || |||||||| || ||||||| |||| |||| || |||| |||||| ||| |||||||||||||||| ||||| || |
|
|
| T |
13307059 |
aggataagcagaaaactgtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagagga |
13306960 |
T |
|
| Q |
144 |
tgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||| || ||||||||||||||||| | ||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
13306959 |
tgaagatatgacttcgaatttcacgggatctgaccctagtctcgatatagtttgcaatgtggtttc |
13306894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 7402188 - 7401986
Alignment:
| Q |
25 |
actaacattgataagatggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaaga |
124 |
Q |
| |
|
||||||||||| || |||||||| || ||||||| |||||| || |||||||| ||| |||||| ||| ||||||| |||| |||||| ||| |||||| |
|
|
| T |
7402188 |
actaacattgacaaaatggaggataaacagaaagctgtgttcgaaatggttaagaaggcagcaacagaaagaatttcacccccattgtcaattttgaaga |
7402089 |
T |
|
| Q |
125 |
aagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtgga |
224 |
Q |
| |
|
| || | | ||||| |||||||| |||||||| |||||||| |||| |||||| ||||| ||||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
7402088 |
agtattgttccaaagaggatgaggagatgacttcaaatttcacggaatgtgacccgagtctcgacatagtttgcaatgtggtttcaatcctgcctgagga |
7401989 |
T |
|
| Q |
225 |
ata |
227 |
Q |
| |
|
||| |
|
|
| T |
7401988 |
ata |
7401986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 1735317 - 1735492
Alignment:
| Q |
52 |
cagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaa |
151 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||||| ||| |||||||| |||| |||||| |||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
1735317 |
cagaaagctgtgttcgagatggttaagaagccagcaacagaacgaatttcacccccattgtcaattctgaagaaagatcattcaaaagaagacgaggaga |
1735416 |
T |
|
| Q |
152 |
tgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1735417 |
tgacttcaaatttcacggaatctgacccaagtcttgacatagtctgtaatgtggtttccatcttgcctgtggaata |
1735492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 17423039 - 17422854
Alignment:
| Q |
42 |
ggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaa |
141 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||| || ||||||| |||| |||| || |||| |||||| || |||||||||||||||| ||||| |
|
|
| T |
17423039 |
ggaggataagcagaaagaggtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatcttgaagaaagatcatcccaaagag |
17422940 |
T |
|
| Q |
142 |
gatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| || || ||||||||||| ||||||||||| || | ||||||||||| |
|
|
| T |
17422939 |
gatgaggagatgacttcgaatttcacgggatctgacccgagcctcgacatagtttgcaatgtggtttctatcctacctgtggaata |
17422854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 22348943 - 22348782
Alignment:
| Q |
48 |
caagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgag |
147 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||||||| |||| || |||| |||||| ||| | |||||||||||||| ||||| ||||| |
|
|
| T |
22348943 |
caagcagaaagttgtgttcgaaatggttaaaaaaccagcaatagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaagaggatgaa |
22348844 |
T |
|
| Q |
148 |
gaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| |||||||| || || || ||||||||||| |
|
|
| T |
22348843 |
gaaatgacttcaaatttcattggatctgaccccagtcttgatatcgtatgcaatgtggtttc |
22348782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 22067800 - 22067956
Alignment:
| Q |
70 |
atggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacag |
169 |
Q |
| |
|
||||||||||||||||| || || |||| || || | || || ||| |||||| || |||||| || || ||||| |||||||||||||||||||| | |
|
|
| T |
22067800 |
atggttaaaaagccagccatggaaagaatctcccctcccttatcaattttgaagagaggtcatcctaaggaggatgaagaaatgacttcgaatttcactg |
22067899 |
T |
|
| Q |
170 |
aatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||||| ||||| || ||||| || |||||||| || |||| ||||||||||| |
|
|
| T |
22067900 |
gatctgaccc-agtctcgatatagtgtgcaatgtggtgtcagtttttcctgtggaata |
22067956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18133761 - 18133578
Alignment:
| Q |
1 |
aaagccacagccttacaagataccactaacattgataagatggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaattt |
100 |
Q |
| |
|
|||||||||||| ||||||| | ||| || ||||| || | ||||| |||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| |
|
|
| T |
18133761 |
aaagccacagccctacaagacatcaccaatattgacaaaagggagggcaagcaaaaagttgtgttcgagatggttaagaaaccagcaacagagcgaattt |
18133662 |
T |
|
| Q |
101 |
cgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtc |
184 |
Q |
| |
|
| |||| |||||| |||||||||||||||| | | |||||||||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
18133661 |
cacccccattgtcaattctgaagaaagatcgttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc |
18133578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 18171812 - 18171652
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||||| ||| |||||||||||| |||||| || |||||||||||||||| || || ||||| | |
|
|
| T |
18171812 |
aagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagaaagaatttcgcccccattgtcaatcttgaagaaagatcatcccaaggaggatgaag |
18171713 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
18171712 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtacaatgtggtttc |
18171652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 14342841 - 14342656
Alignment:
| Q |
42 |
ggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaa |
141 |
Q |
| |
|
|||||| |||||||||| |||||| || |||||||| || ||||||| | | ||||||| |||| |||||| ||| ||||||||||| | | ||||| |
|
|
| T |
14342841 |
ggaggataagcagaaagctgtgttcgaaatggttaagaaaccagcaacaaaaagaatttcacccccattgtcaattttgaagaaagattgttccaaagag |
14342742 |
T |
|
| Q |
142 |
gatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
14342741 |
gatgaggagatgacttcaaatttcacggaatctgacccgagcctcgacatagtttgcaatgtggtttcaatcctgcctgtggaata |
14342656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 18453847 - 18453875
Alignment:
| Q |
139 |
gaagatgaggaaatgacttcgaatttcac |
167 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18453847 |
gaagatgaggaaatgacttcgaatttcac |
18453875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 13289545 - 13289364
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| |||| |||| ||||||| |||||| ||| | |||||||||||||| ||||| ||||| | |
|
|
| T |
13289545 |
aagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcgcccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
13289446 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||||||||| || | ||| |||||||||| |
|
|
| T |
13289445 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctttggaatatga |
13289364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 14772724 - 14772567
Alignment:
| Q |
70 |
atggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacag |
169 |
Q |
| |
|
||||||||||| ||||||| |||| |||| || |||| |||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||| | |
|
|
| T |
14772724 |
atggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactg |
14772625 |
T |
|
| Q |
170 |
aatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||||| ||||| || ||||| || |||||||| || || | ||||||||||| |
|
|
| T |
14772624 |
gatctgaccccagtctcgatatagtatgcaatgtggtctcgatcctacctgtggaata |
14772567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 18562669 - 18562596
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacata |
192 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| || || || | ||||||||||| ||||| |||||| |
|
|
| T |
18562669 |
tgaagaaagatcctccaaaggaagatgaagaaatgacgtcaaacttttctgaatctgacccgagtctcgacata |
18562596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 23435121 - 23435281
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||| |||||||| || |||||||| || |||||||||||| |||| ||||||| |||||| ||| |||||||||||||||| || || ||||| | |
|
|
| T |
23435121 |
aagcagaaggttgtgttcgaaatggttaagaaaccagcaatagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaggaggatgaag |
23435220 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
23435221 |
aaatgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc |
23435281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 19035362 - 19035217
Alignment:
| Q |
43 |
gaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaag |
142 |
Q |
| |
|
|||| |||||| |||| | |||| || || |||||||| ||||||| |||| |||| || | | |||||| ||| |||||||| || |||| ||| | | |
|
|
| T |
19035362 |
gagggcaagcaaaaagctatgttcgaaatagttaaaaaaccagcaacagagagaatctcatctccattgtcaattttgaagaaaaataatcccaaaaagg |
19035263 |
T |
|
| Q |
143 |
atgaggaaatgacttcgaatttcacagaatctgacccaagtcttga |
188 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
19035262 |
atgaagaaatgacttcgaatttcactggatctgaccccagtcttga |
19035217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41380549 - 41380418
Alignment:
| Q |
1 |
aaagccacagccttacaagataccactaacattgataagatggaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaattt |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
41380549 |
aaagccacagccctacaagacaccaccaacattgacaagatggagggcaagcagaaagctgtgttcgagatggttaagaagccagcaacagagcgaattt |
41380450 |
T |
|
| Q |
101 |
cgcccctattgtcgattctgaagaaagatcat |
132 |
Q |
| |
|
| |||| |||||| ||| |||||||||||||| |
|
|
| T |
41380449 |
cacccccattgtcaattttgaagaaagatcat |
41380418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 22806016 - 22805838
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||| || ||| ||||| ||||||||||| ||||||| |||| |||| || |||| |||||| ||||| |||||||||||||| ||||| ||||| | |
|
|
| T |
22806016 |
aagcagagagctgtatttgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag |
22805917 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| | ||| || ||||| || |||||||| || || | ||||||||||| |
|
|
| T |
22805916 |
aaatgacttcaaatttcactggatctgaccccaatctcgatatagtatgcaatgtggtctcaatcctacctgtggaata |
22805838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 11377 - 11558
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||||| |||| |||| ||||||| |||||| ||| | |||||||||||||| ||||| ||||| | |
|
|
| T |
11377 |
aagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagagagaatctcgcccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
11476 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||| ||||||| || ||||||||||| || | ||| |||||||||| |
|
|
| T |
11477 |
aaatgacttcaaatttcactgaatctgaccctagtctcaacatagtatgcaatgtggtttctatcctacctatggaatatga |
11558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 22638334 - 22638494
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||| | |||||| || |||||||| || ||||||| |||| |||| ||||||| |||||| ||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
22638334 |
aagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagaggatgaag |
22638433 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
22638434 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttc |
22638494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 23200807 - 23200647
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||| | |||||| || |||||||| || ||||||| |||| |||| ||||||| |||||| ||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
23200807 |
aagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagaggatgaag |
23200708 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
23200707 |
aaatgacttcgaatttcacgggatctgaccctagtctcgatatagtgtgcaatgtggtttc |
23200647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 23626436 - 23626276
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| | |||||||| || ||||||| |||| |||| ||||||| |||||| || |||| ||||||||||| || || |||| | |
|
|
| T |
23626436 |
aagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaatattgaaaaaagatcatcccaaggaggatgtag |
23626337 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
23626336 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttc |
23626276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 24911914 - 24912091
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||| || ||| || || ||||||||||| ||||||| | || ||||||| |||| ||||| || | ||||| || ||||| ||||| ||||| | |
|
|
| T |
24911914 |
aagcagagagctgttttcgaaatggttaaaaaaccagcaacaaagagaatttcaccccc-ttgtcaatcttaaagaaggaccatcccaaagaggatgaag |
24912012 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||| |||||||| || |||||||| || ||| | |||||||||| |
|
|
| T |
24912013 |
aaatgacttcaaatttcactggatctgaccccagtctcgacatagtatgcaatgtggtatcaattctatctgtggaata |
24912091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 9656 - 9834
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| |||| |||| || |||| |||||| ||| | |||||||| ||||| ||||| ||||| | |
|
|
| T |
9656 |
aagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttaaagaaagaacatcccaaagaggatgaag |
9755 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||| |||||||| || ||||||||||| || | ||||||||||| |
|
|
| T |
9756 |
aaatgacttcaaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctgtggaata |
9834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 126737 - 126577
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||| | |||||| || |||||||| || ||||||| |||| |||| ||||||| |||||| ||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
126737 |
aagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagaggatgaag |
126638 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
126637 |
aaatgacttcgaatttcactggatctgaccctagtctcgatatagtgtgcaatgtggtttc |
126577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 179458 - 179335
Alignment:
| Q |
59 |
ttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttc |
158 |
Q |
| |
|
|||| ||||||||||||||||| |||| | ||| |||| || || | ||||| ||| |||||||||| ||||| ||||| ||||| |||||||| || |
|
|
| T |
179458 |
ttgtttttgagatggttaaaaaatcagccacagaaagaatctcccctcctttgtcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtc |
179359 |
T |
|
| Q |
159 |
gaatttcacagaatctgacccaag |
182 |
Q |
| |
|
||||||| | | ||||||||||| |
|
|
| T |
179358 |
gaatttctccaagtctgacccaag |
179335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 5716 - 5538
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||| |||||| ||||| |||||| |||| ||||||| |||| |||| || |||| |||||| ||||| |||||||||||||| ||||| ||||| | |
|
|
| T |
5716 |
aagcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag |
5617 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||| || ||||| || |||||||| || ||| | ||||||||||| |
|
|
| T |
5616 |
aaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaattctacctgtggaata |
5538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 43161 - 43321
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| |||||| | |||||||| || ||||||| |||| |||| ||||||| |||||| ||| |||||||||||||||| || || ||||| | |
|
|
| T |
43161 |
aagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaggaggatgaag |
43260 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
|| |||||||||||||||| | ||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
43261 |
aactgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc |
43321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 66988 - 67163
Alignment:
| Q |
52 |
cagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaa |
151 |
Q |
| |
|
|||| |||||| ||||| |||||| |||| ||||||| |||| |||| || |||| |||||| ||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
66988 |
cagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaa |
67087 |
T |
|
| Q |
152 |
tgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||| |||||||| | ||||||||| ||||| || ||||| || |||||||| || || | ||||||||||| |
|
|
| T |
67088 |
tgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaatcctacctgtggaata |
67163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 37768 - 37590
Alignment:
| Q |
52 |
cagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaa |
151 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||| | || ||||||| |||| |||||| ||| |||||||||| ||| || || ||||| || | |
|
|
| T |
37768 |
cagaaagctgtgttcgaaatggttaaaaagccagcaacatagagaatttcacccccattgtcaattttgaagaaagactttcccaaggaggatgaagata |
37669 |
T |
|
| Q |
152 |
tgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| || || | |||||||||||||| |
|
|
| T |
37668 |
tgacttcgaatttcactggatctgaccctagtctcgacatagtatgtaacgtggtgtctatcctacctgtggaatatga |
37590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 11493 - 11668
Alignment:
| Q |
52 |
cagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaa |
151 |
Q |
| |
|
||||||| ||| || || ||||||||||| ||||||| |||| |||| || |||| |||||| ||| | |||||||||||||| ||||| ||||| |||| |
|
|
| T |
11493 |
cagaaagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattataaagaaagatcatcccaaagaggatgaagaaa |
11592 |
T |
|
| Q |
152 |
tgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||| || || || |||||||| || || | ||||||||||| |
|
|
| T |
11593 |
tgacttcaaatttcactggatctgaccccagtcttgatatcgtatgcaatgtggtctcaatcctacctgtggaata |
11668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 26218 - 26405
Alignment:
| Q |
43 |
gaggacaagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaag |
142 |
Q |
| |
|
||||| || ||||||| |||||| || ||||||||||||||||||| |||| |||| || |||| |||||| ||| |||||||||| || || || | |
|
|
| T |
26218 |
gaggataaacagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttgaagaaagactctctcaaggagg |
26317 |
T |
|
| Q |
143 |
atgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||| || ||||||||||||||||| | ||||||||| ||||| |||||||| || || ||||| ||||| | |||||||||||||| |
|
|
| T |
26318 |
atgaagagatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaacgtggtgtccatcctacctgtggaatatga |
26405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 29637 - 29798
Alignment:
| Q |
48 |
caagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgag |
147 |
Q |
| |
|
|||||| |||| |||||| || ||||||||||| ||||| |||||| |||| || |||| ||||| ||| |||||||||||||||| ||||| ||||| |
|
|
| T |
29637 |
caagcaaaaagatgtgttcgaaatggttaaaaaaccagccatagagagaatctcacccccgttgtcaattttgaagaaagatcatcccaaagaggatgaa |
29736 |
T |
|
| Q |
148 |
gaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
|||||||| || ||||||| | ||||||||| || || |||||||| || ||||||||||| |
|
|
| T |
29737 |
gaaatgacctcagatttcaccggatctgaccccagcctagacatagtatgcaatgtggtttc |
29798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 21511006 - 21511145
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||||| |||| |||| || |||| |||||| ||| | |||||||||||||| || || ||||| | |
|
|
| T |
21511006 |
aagcagaaagcggtgttcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaggaggatgaag |
21511105 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttga |
188 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
21511106 |
aaatgacttcaaatttcactggatctgaccccagtcttga |
21511145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0656 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0656
Description:
Target: scaffold0656; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 5078 - 5235
Alignment:
| Q |
70 |
atggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacag |
169 |
Q |
| |
|
||||||||||||||||||| |||| |||| || |||| ||||| || | |||||||| ||||| || || ||||| |||||||||||||||||||| | |
|
|
| T |
5078 |
atggttaaaaagccagcaacagagagaatctcaccccccttgtcaatcttaaagaaagaccatcccaaggaggatgaagaaatgacttcgaatttcactg |
5177 |
T |
|
| Q |
170 |
aatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||| ||||| |||||||| || |||||||| || ||| | ||||||||||| |
|
|
| T |
5178 |
gatctgacctcagtctcgacatagtatgcaatgtggtatcaattctacctgtggaata |
5235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 33634 - 33742
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcc |
218 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||||||||||||||||||| | ||||||||| ||||| |||||||| || |||||||| || ||||||| |
|
|
| T |
33634 |
tgaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcattggatctgaccccagtctcgacatagtgtgcaatgtggtgtcagttttgcc |
33733 |
T |
|
| Q |
219 |
tgtggaata |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
33734 |
tgtggaata |
33742 |
T |
|
Back To:
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Target: scaffold0001 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 126938 - 126760
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||| ||| |||| |||| || |||| ||||| ||| | |||||||||||||| || || ||||| | |
|
|
| T |
126938 |
aagcagaaagcggtgttcgaaatggttaaaaaaccaacaacagagagaatctcacccccattgtgaattttaaagaaagatcatcccaatgaggatgaag |
126839 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaata |
227 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| |||||||| || || || |||||||| || || | ||||||||||| |
|
|
| T |
126838 |
aaatgacttcaaatttcacgggatctgaccccagtcttgatatcgtatgcaatgtggtctcgatcctacctgtggaata |
126760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 65268 - 65376
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||| |||| |||| | |||| |||||| ||| | |||||||||||||| ||||| ||||| | |
|
|
| T |
65268 |
aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
65367 |
T |
|
| Q |
149 |
aaatgactt |
157 |
Q |
| |
|
||||||||| |
|
|
| T |
65368 |
aaatgactt |
65376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 74446 - 74554
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||| |||| |||| | |||| |||||| ||| | |||||||||||||| ||||| ||||| | |
|
|
| T |
74446 |
aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
74545 |
T |
|
| Q |
149 |
aaatgactt |
157 |
Q |
| |
|
||||||||| |
|
|
| T |
74546 |
aaatgactt |
74554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 48986 - 48875
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcc |
218 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||| ||||| ||| | ||||||||||||||||| |||||| | |||||||| || || | ||||| |
|
|
| T |
48986 |
tgaagaaagatcatccaaaggaggatgaagaaatgacgtcgaacttctctgaatctgacccaagtctcgacatactatgtaatgtagtgtcagtgttgcc |
48887 |
T |
|
| Q |
219 |
tgtggaatatga |
230 |
Q |
| |
|
||| |||||||| |
|
|
| T |
48886 |
tgttgaatatga |
48875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 159243 - 159086
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||| ||| |||| || || | || || || |||||||| | ||||| || || ||||| | |
|
|
| T |
159243 |
aagcagaaagccgtttttgaaatggttaaaaagccagcaacagaaagaatctcaccgcccttatcaatcttgaagaaaaaccatcccaaggaggatgaag |
159144 |
T |
|
| Q |
149 |
aaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggt |
206 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
159143 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggt |
159086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 139079 - 138991
Alignment:
| Q |
121 |
aagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttc |
209 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
139079 |
aagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcactgggtctgaccctagtctcgacatagtatgcaatgtggtttc |
138991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 75454 - 75541
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggt |
206 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||||||| ||||||| || ||||| || |||||||| |
|
|
| T |
75454 |
tgaagaaagaccatcctaaagaggatgaagaaatgacgtcaaatttcacagaatctgactcaagtctcgatatagtatgcaatgtggt |
75541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 83883 - 83970
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggt |
206 |
Q |
| |
|
|||||||||| ||| | ||||| ||||| ||||||| || |||||||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
83883 |
tgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt |
83970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 121555 - 121642
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggt |
206 |
Q |
| |
|
|||||||||| ||| | ||||| ||||| ||||||| || |||||||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
121555 |
tgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt |
121642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 148841 - 148921
Alignment:
| Q |
150 |
aatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatga |
230 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||| || ||||| || |||||||| || || |||| ||| |||||||| |
|
|
| T |
148841 |
aatgacgtcaaatttcacaaaatctgacccaagtctcgatatagtatgcaatgtggtatcaatattgcatgttgaatatga |
148921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 42372 - 42264
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcc |
218 |
Q |
| |
|
|||||||| ||||||| || || ||||| |||||||| ||||||||||| |||||||| |||||||| || ||||| || |||||||| | ||||||| |
|
|
| T |
42372 |
tgaagaaaaatcatcctaaggaggatgaagaaatgacgtcgaatttcactgaatctgatccaagtctcgatatagtgtgcaatgtggtgttagttttgcc |
42273 |
T |
|
| Q |
219 |
tgtggaata |
227 |
Q |
| |
|
||| ||||| |
|
|
| T |
42272 |
tgttgaata |
42264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0362 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0362
Description:
Target: scaffold0362; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 14526 - 14634
Alignment:
| Q |
119 |
tgaagaaagatcatccaaaagaagatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcc |
218 |
Q |
| |
|
|||||| ||||||||| || || ||||| |||||||||||||||||||| | |||| |||| ||||| || ||| | || ||||| || || ||||||| |
|
|
| T |
14526 |
tgaagagagatcatcctaaggaggatgaagaaatgacttcgaatttcactggatctaaccccagtctcgatataatatgcaatgtcgtgtcagttttgcc |
14625 |
T |
|
| Q |
219 |
tgtggaata |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
14626 |
tgtggaata |
14634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 1874 - 1992
Alignment:
| Q |
49 |
aagcagaaagttgtgtttgagatggttaaaaagccagcaatagagcgaatttcgcccctattgtcgattctgaagaaagatcatccaaaagaagatgagg |
148 |
Q |
| |
|
||||||| || ||| || || ||||||||||| ||||||| |||| |||| || |||| ||||| || | |||||||| ||||| || | ||||| | |
|
|
| T |
1874 |
aagcagagagctgttttcgaaatggttaaaaaaccagcaacagagagaatctcaccccccttgtcaatcttaaagaaagaccatcccaagtaggatgaag |
1973 |
T |
|
| Q |
149 |
aaatgacttcgaatttcac |
167 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1974 |
aaatgacttcgaatttcac |
1992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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