View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_406 (Length: 230)
Name: NF9839A_low_406
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_406 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4355859 - 4355630
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355859 |
agcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
4355760 |
T |
|
| Q |
101 |
gaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355759 |
taatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatg |
4355660 |
T |
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| Q |
201 |
ataaacacgacatgtatagcaattttttga |
230 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
4355659 |
ataaacacgacatgtatagcaatttattga |
4355630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4675053 - 4675282
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4675053 |
agcattgttgagtttccattctcgagatgataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
4675152 |
T |
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| Q |
101 |
gaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatg |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4675153 |
aaatggctttgttgtgaaacaagttcatgtcgaagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatg |
4675252 |
T |
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| Q |
201 |
ataaacacgacatgtatagcaattttttga |
230 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
4675253 |
ataaacacgacatgtatagcaatttattga |
4675282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20657086 - 20656984
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
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||||| |||||| |||||||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||| ||| || ||||||||||||| || |
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| T |
20657086 |
agcatagttgagattccattctctagattataagacattatatatggcttataaaaaggcctagattttgcaaagtaagaagtgcaatctgagataaaat |
20656987 |
T |
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| Q |
101 |
gaa |
103 |
Q |
| |
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||| |
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| T |
20656986 |
gaa |
20656984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12036771 - 12036669
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||| | |||||||| |||||||| |||| ||||||||| ||| | |||||||||||||| || |
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| T |
12036771 |
agcatggttgagattccattctctagattataagacattgtatatggcttataaaaaggactagattttgcaaagtaagaatcacaatctgagataaaat |
12036672 |
T |
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| Q |
101 |
gaa |
103 |
Q |
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||| |
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| T |
12036671 |
gaa |
12036669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12035953 - 12036055
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
| |
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||||| |||||| || ||||||| ||||||||||||||||| ||| |||| |||||||| |||| ||||||||| ||| | ||||||||||||| || |
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| T |
12035953 |
agcatagttgagatttcattctctagattataagacattatatatagcttataaaaaggactagattttgcaaagtaagaggcgcaatctgagataaaat |
12036052 |
T |
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| Q |
101 |
gaa |
103 |
Q |
| |
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||| |
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| T |
12036053 |
gaa |
12036055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20656031 - 20656105
Alignment:
| Q |
1 |
agcattgttgagtttc-cattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaa |
74 |
Q |
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||||| |||||| ||| ||||||| |||||||||||||||| |||||||| |||||||| |||| ||||||||| |
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| T |
20656031 |
agcatagttgagattctcattctctagattataagacattacatatggcttataaaaaggactagattttgcaaa |
20656105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38249443 - 38249226
Alignment:
| Q |
1 |
agcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacat |
100 |
Q |
| |
|
||||| |||||| |||| ||||| | ||||||||||||||| |||||||| ||||| || |||| ||||||||| ||| || | ||||||||||| || |
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| T |
38249443 |
agcatagttgagattccgttctctatattataagacattatatatggcttataaaatggactagattttgcaaagtaaggatcgctatctgagataaaat |
38249344 |
T |
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| Q |
101 |
gaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaag-gaaaccattatccattgttttccacacaccttccttttcat |
199 |
Q |
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||| | || ||||||||||| |||||| || |||||||||| |||||| || | |||||| | ||||||||| |||||||||||||||| || |
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| T |
38249343 |
gaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca-catgaaaaaccactttccattgttgtccacacaccttccttgctat |
38249245 |
T |
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| Q |
200 |
gataaacacgacatgtata |
218 |
Q |
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| T |
38249244 |
ggtaaacactacatgtata |
38249226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 38254547 - 38254458
Alignment:
| Q |
14 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
103 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |||||||| |||| | |||||| ||| || ||||||||||||| ||||| |
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| T |
38254547 |
ttccattctctagattataagacattatatatggcttataaaaaggactagatcttgcaatgtaagaagcgcaatctgagataaaatgaa |
38254458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 22177494 - 22177405
Alignment:
| Q |
14 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
103 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |||||||| || | ||||||||| ||| || ||||||||||||| ||||| |
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| T |
22177494 |
ttccattctctagattataagacattatatatggcttataaaaaggactggattttgcaaagtaagaagcgcaatctgagataaaatgaa |
22177405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 22169219 - 22169130
Alignment:
| Q |
14 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
103 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |||||||| || | ||||||| | ||| || ||||||||||||| ||||| |
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| T |
22169219 |
ttccattctctagattataagacattatatatggcttataaaaaggactggattttgcatagtaagaagcgcaatctgagataaaatgaa |
22169130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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