View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_407 (Length: 230)
Name: NF9839A_low_407
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_407 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22205565 - 22205333
Alignment:
| Q |
1 |
gaaaaagggaaattagttcaaattttctttttgaccttaaaaaagatcaagctgacagtttttagcgttctaagaaacagattggccagttagattggtt |
100 |
Q |
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| T |
22205565 |
gaaaaagggaagttagttcaaattttctttttgaccttaaaaaagatcaagctgacag--tttagcgttctaagaaacagattggccagttagattggtt |
22205468 |
T |
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| Q |
101 |
ggtccatgatctg-----gttcttgtaagagatctaatttattgttttccttttgtatttcttataatacaaagcttgtgcaacagttgttgggtgagag |
195 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22205467 |
ggtccatgatttggttcagttcttgtaagagatctaatttattgttttccttttgtatttcttataatacaaagcttgtgcaacagttgttgggtgagag |
22205368 |
T |
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| Q |
196 |
tttattatttattaccaccagagcataggttatga |
230 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
22205367 |
tttattatttattaccaccagagcataggttatga |
22205333 |
T |
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