View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_408 (Length: 230)
Name: NF9839A_low_408
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_408 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 1482907 - 1483136
Alignment:
| Q |
1 |
ttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgataatttttatttgagaggaagc |
100 |
Q |
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| T |
1482907 |
ttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgataatttttatttgagaggaagc |
1483006 |
T |
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| Q |
101 |
gtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggttttaaggg |
200 |
Q |
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| T |
1483007 |
gtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggatttaagga |
1483106 |
T |
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| Q |
201 |
ttaggggtttctgggagttgctaggcatga |
230 |
Q |
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| T |
1483107 |
ttaggggtttctgggagttgctaggcatga |
1483136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36717640 - 36717882
Alignment:
| Q |
1 |
ttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgataatttttattt---------- |
90 |
Q |
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| T |
36717640 |
ttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgattgttttttttttttttttttt |
36717739 |
T |
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| Q |
91 |
---------gagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaa |
179 |
Q |
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| T |
36717740 |
tctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgggtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaaa |
36717839 |
T |
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| Q |
180 |
ttagtgtgtaggttttaagggttaggggtttctgggagttgcta |
223 |
Q |
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| T |
36717840 |
ccaatgtgtaggatttaa-ggttaagggtttctgggagttgcta |
36717882 |
T |
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