View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_412 (Length: 230)
Name: NF9839A_low_412
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_412 |
 | |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17364645 - 17364874
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17364645 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatgcaaatatccaaaacaagtctcatatataaacaagtctccaaacataa |
17364744 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
17364745 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc |
17364844 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
17364845 |
tcatgctccacgtgcgttgctttcatctga |
17364874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43941968 - 43941738
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaa-caagtctcaaatataaacaagtctccaaacata |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43941968 |
ttttgaacattgtcattgatatatttataatttaactcaagtggagtttgatgcaaatatccaaaaacaactctcaaatataaacaagtctccaaacata |
43941869 |
T |
|
| Q |
100 |
aagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
43941868 |
aagttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggact |
43941769 |
T |
|
| Q |
200 |
ctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43941768 |
ctcatgctcgacgtgcgttgctttcatctga |
43941738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41678819 - 41679045
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41678819 |
ttttaaacattgtcattgatatatttctaattcaactcaagtggagtttgatacaaatatccaaaataagtctcaaatataaacaagtctccaaacataa |
41678918 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41678919 |
agttacacaaaccattgccaccatctttagctattatcaaaat---aagtttcaaaacataaaaatgactagacaactaatgtcactaaaattaggactc |
41679015 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
41679016 |
tcatgctctacgtgcgttgctttcatctga |
41679045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27301763 - 27301992
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27301763 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtcttaaatataaacaagtctccaaaaataa |
27301862 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
27301863 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc |
27301962 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
27301963 |
tcatgctccacgtgcgttgctttcatctga |
27301992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 20572330 - 20572559
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
20572330 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatgcaaatatccaaaacaagtctcatatataaacaattctccaaacataa |
20572429 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
20572430 |
tgttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc |
20572529 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
20572530 |
tcatgctcgacgtgcattgctttcatctga |
20572559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 26473556 - 26473471
Alignment:
| Q |
53 |
acaaatatccaaaacaagtctcaaatataaacaagtctccaaacataaagttacacaaaccattgccaccatctttagctattctc |
138 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
26473556 |
acaaatatccaaaacaagtttcaaatataaacaagtctccaaacataaagttacacaaaccattgcaaccatctttagctactctc |
26473471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26700943 - 26700714
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26700943 |
ttttaaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatctaaaataagtctcaaatataaacaagtctccaaacataa |
26700844 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26700843 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc |
26700744 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| || |||||||||||||||||| |
|
|
| T |
26700743 |
tcatgctccacttgcgttgctttcatctga |
26700714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26970676 - 26970447
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26970676 |
ttttaaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatctaaaataagtctcaaatataaacaagtctccaaacataa |
26970577 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26970576 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc |
26970477 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| || |||||||||||||||||| |
|
|
| T |
26970476 |
tcatgctccacttgcgttgctttcatctga |
26970447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25073336 - 25073105
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25073336 |
ttttgaacattgtcattgatatatttataattcaactgaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
25073237 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatc--tttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggac |
198 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
25073236 |
agttacataaaccattgccaccatctttttagcaattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggac |
25073137 |
T |
|
| Q |
199 |
tctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
25073136 |
tctcatgctccacgtgcgttgctttcatctga |
25073105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25131307 - 25131076
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25131307 |
ttttgaacattgtcattgatatatttataattcaactgaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
25131208 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatc--tttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggac |
198 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
25131207 |
agttacataaaccattgccaccatctttttagcaattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggac |
25131108 |
T |
|
| Q |
199 |
tctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
25131107 |
tctcatgctccacgtgcgttgctttcatctga |
25131076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40690488 - 40690249
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatcca----------aaacaagtctcaaatataaacaagtct |
90 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40690488 |
ttttgaacattttcattgatatatttataattcaactcaagtggagtttgatacaaatatccattctcaaaataaacaagtctcaaatataaacaagtct |
40690389 |
T |
|
| Q |
91 |
ccaaacataaagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
40690388 |
ccaaacataaagttacacaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactacacaaatgatgtcactaaa |
40690289 |
T |
|
| Q |
191 |
attaggactctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||| ||||||||||| || ||| |||||||||||||| |
|
|
| T |
40690288 |
attagggctctcatgctccacatgcattgctttcatctga |
40690249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 19545722 - 19545485
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatcca----------aaacaagtctcaaatataaacaagtct |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
19545722 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatattcattctcaaaataaacaagtctcaaatataaacaagttt |
19545623 |
T |
|
| Q |
91 |
ccaaacataaagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaa |
190 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
19545622 |
ccaaacataaagttacaaaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgac--cacaactgatgtcactaaa |
19545525 |
T |
|
| Q |
191 |
attaggactctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
19545524 |
attaggactctcatgctcaacatgcattgctttcatctga |
19545485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5660518 - 5660287
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatattt--ataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacat |
98 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
5660518 |
ttttgaacattgtcattgatatatttttataattcaactcaagtggagtttgatacaaatatccaaaaccagtcttaaatataaacaagtctccaaacat |
5660419 |
T |
|
| Q |
99 |
aaagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggac |
198 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
5660418 |
aaagttacgcaaaccatcgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaacttatgtcactaaaattaggac |
5660319 |
T |
|
| Q |
199 |
tctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
5660318 |
tctcatgctccacgtgcgttgctttcatctga |
5660287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18559268 - 18559490
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
18559268 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccat------tctcaaa-ataaacaagtctccaaacataa |
18559360 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattaggactc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
18559361 |
agttacacaaaccattgccactatctttagctattctcaaaataacaagtttcaaaacataaaaatgactacacaactcatgtcactaaaattaggactc |
18559460 |
T |
|
| Q |
201 |
tcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| |
|
|
| T |
18559461 |
tcatgctccacgtgcattgttttcatctga |
18559490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24498117 - 24498350
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatt----tataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaac |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24498117 |
ttttgaacattgtcattgatatatttatttataattcaactcaagtgaagtttgatacaaatatccaaaaccagtctcaaatataaacaagtctccaaac |
24498216 |
T |
|
| Q |
97 |
ataaagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaaattagg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
24498217 |
ataaagttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcaataaaattagg |
24498316 |
T |
|
| Q |
197 |
actctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
24498317 |
actctcatgctccacgtgcgttgctttcatctga |
24498350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12313971 - 12314142
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
12313971 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccat------tctcaaa-ataaacaagtctccaaacataa |
12314063 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattc-tcaaaataacaaatttcaaaacataaaaatgactagacaatt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
12314064 |
agttacacaaaccattgccaccatctttcgcaattcttaaaaataacaagtttcaaaacataaaaatgactacacaatt |
12314142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12285615 - 12285786
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccaaaacaagtctcaaatataaacaagtctccaaacataa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| | ||||||||| |
|
|
| T |
12285615 |
ttttaaacattgtcattgatatatttataattcaactcaagtgaagtttgatacaaatatccat------tctcaaa-ataaacaagtgttcaaacataa |
12285707 |
T |
|
| Q |
101 |
agttacacaaaccattgccaccatctttagctattctc-aaaataacaaatttcaaaacataaaaatgactagacaatt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
12285708 |
agttacacaaaccattgccaccatctttagcaattctcaaaaataacaagtttcaaaacataaaaatgactacacaatt |
12285786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26223350 - 26223113
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatcca----------aaacaagtctcaaatataaacaagtct |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
26223350 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatccattctcaaaataaacaagtctcaaatataaacaagttt |
26223251 |
T |
|
| Q |
91 |
ccaaacataaagttacacaaaccattgccaccatctttagctattctcaaaataacaaatttcaaaacataaaaatgactagacaattaatgtcactaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
26223250 |
tcaaacataaagttacacaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgac--cacaactgatgtcactaaa |
26223153 |
T |
|
| Q |
191 |
attaggactctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
||| |||||||||||||| || ||| |||||||||||||| |
|
|
| T |
26223152 |
atttggactctcatgctcaacatgcattgctttcatctga |
26223113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16367737 - 16367977
Alignment:
| Q |
1 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatcca----------aaacaagtctcaaatataaacaagtct |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16367737 |
ttttgaacattgtcattgatatatttataattcaactcaagtggagtttgatacaaatatcctttctcaaaataaacaagtctcaaatataaacaagtct |
16367836 |
T |
|
| Q |
91 |
ccaaacataaagttacacaaaccattgccaccatctttagctattc-tcaaaataacaaattt-caaaacataaaaatgactagacaattaatgtcacta |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
16367837 |
ccaaacataaagttacacaaaccatttcca-catctttagctattcgacaaaataacaagtttacaaaacataaaaatgactacacaaatgatgtcacta |
16367935 |
T |
|
| Q |
189 |
aaattaggactctcatgctcgacgtgcgttgctttcatctga |
230 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
16367936 |
aaatgaggactctcatgctccacgtgcattgctgtcatctga |
16367977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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