View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_414 (Length: 230)
Name: NF9839A_low_414
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_414 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9028870 - 9029100
Alignment:
| Q |
1 |
ttgctatctctttacaattttttcaaataattcttaagcaccgaggaacctcaacatcttgattgaaaaccctaaccacgaggtgtgaatcattgctaat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
9028870 |
ttgctatctctttacaatttttccaaataattcttaagtaccgaggaacctcaacatcttgattgaaaaccctaaccactaggtgtgaatcattgccaat |
9028969 |
T |
|
| Q |
101 |
atttcgtacaaatccaccaataaatctagcttaatattacac-attaaattagtatgagaatacttttatactactcttagtttcttatcaaacgaaaaa |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028970 |
atttcgtacagatccaccaataaatctagcttaatattacacaattaaattagtatgagaatacttttatactactcttagtttcttatcaaacgaaaaa |
9029069 |
T |
|
| Q |
200 |
tcgccatttgtgggagggagctctgaaatga |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9029070 |
tcgccatttgtgggagggagctctgaaatga |
9029100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University