View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_415 (Length: 230)
Name: NF9839A_low_415
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_415 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 18446574 - 18446352
Alignment:
| Q |
8 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgaatatgtcaatccctatacatct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
18446574 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgattctgtcaatccctatacatct |
18446475 |
T |
|
| Q |
108 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaaggccggagggagtgcatattta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18446474 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaattgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatattta |
18446375 |
T |
|
| Q |
208 |
tttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18446374 |
tttgtgaatggtgaaaattgatg |
18446352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 36404339 - 36404125
Alignment:
| Q |
8 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
36404339 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctatgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatc |
36404240 |
T |
|
| Q |
107 |
ttctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaaggccggagggagtgcatattt |
206 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
36404239 |
ttctctccacttggaactccctatggtcattttaagcattaagttgaacagtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattt |
36404140 |
T |
|
| Q |
207 |
atttgtgaatggtga |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36404139 |
atttgtgaatggtga |
36404125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 18578863 - 18578899
Alignment:
| Q |
194 |
ggagtgcatatttatttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18578863 |
ggagtacatatttatttgtgaatggtgaaaattgatg |
18578899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 55353289 - 55353512
Alignment:
| Q |
8 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
55353289 |
aatgaataggcagaggaagaagacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatc |
55353388 |
T |
|
| Q |
107 |
ttctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaaggccggagggagtgcatattt |
206 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
55353389 |
ttctcttcatttgaaactccctatggtcattttaagcattaagttgaactgtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattt |
55353488 |
T |
|
| Q |
207 |
atttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
55353489 |
atttgtgaatggtgaaaattgatg |
55353512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 29607644 - 29607419
Alignment:
| Q |
8 |
aatgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggc-tttgtgtgatatgaatatgtcaatccctatacatc |
106 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||||||||||||| | ||||| | | ||||| |||||||| | |||||||||||||||||| |
|
|
| T |
29607644 |
aatgaatggacagaggaagaggactgttgtaatgacgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatc |
29607545 |
T |
|
| Q |
107 |
ttctcttcacttggaactctctatggtca---ttttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaaggccggagggagtgcata |
203 |
Q |
| |
|
| ||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| | ||||||||||||| |||||| || ||||||| ||| |
|
|
| T |
29607544 |
tgctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttgctcaaaaatttatattattcaagacccaagggagtaaata |
29607446 |
T |
|
| Q |
204 |
tttatttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
29607445 |
ttattttgtgaatggtgaaaattgatg |
29607419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 14906121 - 14906157
Alignment:
| Q |
194 |
ggagtgcatatttatttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14906121 |
ggagtacatatttatttgtgaatggtgaaaattgatg |
14906157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 13674274 - 13674238
Alignment:
| Q |
194 |
ggagtgcatatttatttgtgaatggtgaaaattgatg |
230 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13674274 |
ggagtacatatttatttgtgaatggtgaaaattgatg |
13674238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University