View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_416 (Length: 230)
Name: NF9839A_low_416
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_416 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 40298312 - 40298113
Alignment:
| Q |
12 |
acatcaaagactacttgtattagggaaaaataggatctatttactagttctagcatctaagagaaaagctacataatagtttaatattcaagtcgaatta |
111 |
Q |
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| T |
40298312 |
acatcaaggactacttgtattagggaaaaataggatctatttactagttctagcatctaagagaaaagctacataatagtttaatattcaagtcgaataa |
40298213 |
T |
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| Q |
112 |
tcaaaaataatcactcttatgttacaagataacgcataaaagaaaactaaaagtaaaatacagcagaacctaccaacatactgggtacaagtgtacaaca |
211 |
Q |
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| T |
40298212 |
acgaaaataatcactcttatgttacaagataacgcataaaagaaaactaaaagtaaaatacagtagaacctaccaacatactgggtacaagtgtacaaca |
40298113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 40313257 - 40313075
Alignment:
| Q |
27 |
tgtattagggaaaaataggatctatttactagttctagcatctaagagaaaagctacataatagttt-aatattcaagtcgaattatcaaaaataatcac |
125 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
40313257 |
tgtattagggaaaggtaggaactatttaccagttctagcatctaaaagaaaaggtagataatagtttaaatattcaagtcgaattatc-caaataatcac |
40313159 |
T |
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| Q |
126 |
tcttatgttacaagataacgcataaaagaaaactaaaagtaaaatacagcagaacctaccaacatactgggtacaagtgtacaaca |
211 |
Q |
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| T |
40313158 |
tcttatgttacaagaga--gcctaaaaggaaatttaaagtaaaatagagtagaacctaccaacatacagggtacaagtgcacaaca |
40313075 |
T |
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