View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_420 (Length: 230)
Name: NF9839A_low_420
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_420 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2402822 - 2403051
Alignment:
| Q |
1 |
tcatctaattaacatataacatacacgtatgcagcatggaaacgatgtgatctggctcattgcaatctaaatttgactctataatcttccaatttatgca |
100 |
Q |
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| T |
2402822 |
tcatctaattaacatataacatacacgtatgcaccatggaaacgatgtgatatggctcattgccatctaaatttggctctataatcttccaatttatgca |
2402921 |
T |
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| Q |
101 |
atcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaattttatttatatatgaataatttgattgatttcaaaacgt |
200 |
Q |
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| T |
2402922 |
atcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaattttatttatatatgaataatttgattgatttcaaaacgt |
2403021 |
T |
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| Q |
201 |
acaagtacttttataattccataaagatga |
230 |
Q |
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| T |
2403022 |
ataagtacttttataattccataaagatga |
2403051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 39682518 - 39682718
Alignment:
| Q |
23 |
acacgtatgcagcatggaaacgatgtgatctggctcattgcaatctaaatttgactctataatcttccaatttatgcaatcatcaactaaaaagatgaaa |
122 |
Q |
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| T |
39682518 |
acacttatgcataatggaaacgatgaaatatggctcattggcatctaaatttgactccataatcttccaatttatgcaatcatcaactaaaaagatgaaa |
39682617 |
T |
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| Q |
123 |
attggtcgttgttggcgtgactttcattaaaacatgaattttatttatatatgaataatttgattgatttcaaaacgtacaagtacttttataattccat |
222 |
Q |
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| T |
39682618 |
attggtcgttgttggcgtggc-ttcattaaaacatgaattttatttatatatg---aatttgattgatttcaaaacatataagtacttt--taattccat |
39682711 |
T |
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| Q |
223 |
aaagatg |
229 |
Q |
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| T |
39682712 |
aaagatg |
39682718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 2656332 - 2656131
Alignment:
| Q |
23 |
acacgtatgcagcatggaaacgatgtgatctggctcattgcaatctaaatttgactctataatcttccaatttatgcaatcatcaactaaaaagatgaaa |
122 |
Q |
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|||| |||||| ||||||||||||| ||| || |||||| ||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2656332 |
acacttatgcatcatggaaacgatgaaatccggttcattggcatctaaatttggctccataatcttccaatttatgcaatcaaccactaaaaagatgaaa |
2656233 |
T |
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| Q |
123 |
attggtcgttgttggcgtgactttcattaaaacatgaattttatttatatatgaataatttgattgatttcaaaacgtacaagtacttttataattccat |
222 |
Q |
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| T |
2656232 |
actggtcgttgttggtgtggc-ttcattaaaacatgaattttatttatatatg---aatttgattgatttcaaaacatacaagtacttt--taattccat |
2656139 |
T |
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| Q |
223 |
aaagatga |
230 |
Q |
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|||||||| |
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| T |
2656138 |
aaagatga |
2656131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 545252 - 545328
Alignment:
| Q |
92 |
atttatgcaatcatcaactaaaaagatgaaaattggtcgttgttggcgtgactttcattaaaacatgaattttatttata |
171 |
Q |
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||||||||||| | ||||| || |||| |||||||||||| ||| |||||||| | ||||| ||||||||||||||||| |
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| T |
545252 |
atttatgcaattaacaactgaagagat--aaattggtcgttattgacgtgactt-ctttaaagcatgaattttatttata |
545328 |
T |
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