View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_422 (Length: 230)
Name: NF9839A_low_422
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_422 |
 | |
|
| [»] scaffold0157 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: scaffold0157 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35516 - 35745
Alignment:
| Q |
1 |
agtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtcc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35516 |
agtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtcc |
35615 |
T |
|
| Q |
101 |
ttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35616 |
ttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattacctttagg |
35715 |
T |
|
| Q |
201 |
gagtcattattccattaaggtttcgagtga |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
35716 |
gagtcattattccagtaaggtttcgagtga |
35745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12484961 - 12484732
Alignment:
| Q |
1 |
agtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtcc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12484961 |
agtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggtcc |
12484862 |
T |
|
| Q |
101 |
ttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12484861 |
ttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattacctttagg |
12484762 |
T |
|
| Q |
201 |
gagtcattattccattaaggtttcgagtga |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
12484761 |
gagtcattattccagtaaggtttcgagtga |
12484732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12468837 - 12468608
Alignment:
| Q |
1 |
agtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtcc |
100 |
Q |
| |
|
||||||| | |||| |||||| |||||| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12468837 |
agtaaacgacgtgggtgataacttatttcgggtgagagtaagcatacttgagccaatgcccttgagttagtcttattgtgtaggtttagggttttggtcc |
12468738 |
T |
|
| Q |
101 |
ttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagg |
200 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||| || ||| |
|
|
| T |
12468737 |
ttgaacctttacctggaaaattgtcctcatgggacctctgtaagcaaattatgaggagatgatgatggatccaaacatgatggtctagattgccaccagg |
12468638 |
T |
|
| Q |
201 |
gagtcattattccattaaggtttcgagtga |
230 |
Q |
| |
|
| |||||||||||| | |||||||||||| |
|
|
| T |
12468637 |
gggtcattattccagtgcggtttcgagtga |
12468608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 12466175 - 12465985
Alignment:
| Q |
24 |
tatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactg |
123 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
12466175 |
tatttcgagtgagagtaagcatacctgagccaatgcccttgagttagtcataatgtgtaggtttagggtttcggtccttgaacctttaccaggaaaactg |
12466076 |
T |
|
| Q |
124 |
tccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtcattattcca |
214 |
Q |
| |
|
|||| ||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||| | | |||| |||||||||||| |
|
|
| T |
12466075 |
tcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgacatcagggggtcattattcca |
12465985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 51264197 - 51264155
Alignment:
| Q |
73 |
ttattgtgtaggtttagggtttcggtccttgaacctttacctg |
115 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
51264197 |
ttatagtgtaggtttaggtttttggtccttgaacctttacctg |
51264155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University