View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_428 (Length: 230)
Name: NF9839A_low_428
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_428 |
 | |
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| [»] scaffold1800 (1 HSPs) |
| | |
|
| [»] scaffold0337 (1 HSPs) |
| | |
|
| [»] scaffold0092 (1 HSPs) |
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| [»] scaffold1102 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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| [»] scaffold0058 (1 HSPs) |
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| [»] scaffold0021 (2 HSPs) |
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| [»] scaffold0165 (2 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0217 (1 HSPs) |
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| [»] scaffold0139 (1 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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| [»] scaffold0180 (1 HSPs) |
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| [»] scaffold1939 (1 HSPs) |
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| [»] scaffold0116 (1 HSPs) |
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| [»] scaffold0125 (3 HSPs) |
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| [»] scaffold0462 (2 HSPs) |
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| [»] scaffold0104 (2 HSPs) |
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| [»] scaffold0308 (1 HSPs) |
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| [»] scaffold0213 (1 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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| [»] scaffold0630 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 33060325 - 33060532
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| || ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33060325 |
acatcaatttttatattaattctttggattgcctacactttcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattataaacaacaac |
33060424 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33060425 |
aaaattaaaccc-ttttccagaattatagactcatgattaaagaaggttagtcccacccttaccttagatttgttcaattctgaattctacaagctttcc |
33060523 |
T |
|
| Q |
207 |
tttcttctc |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
33060524 |
tttcttctc |
33060532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 42565983 - 42565800
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||||| |||| |||||||||||| |
|
|
| T |
42565983 |
ttaattcattggattacgtacactttcaacaatcaaatttcaatttaaacctaacttctataacaacaaaattatcaacaactacaagattaaacccttt |
42565884 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
|| |||||||||| | | ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42565883 |
tt-cagaattatatatttatgattaaagaagattagtctcacccttaccttagattggttaaattctgaattctacaagctttcc |
42565800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 21661155 - 21661293
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| |||||| ||||| |||||||| |||| ||| ||| |
|
|
| T |
21661155 |
attaattcattggattacttacactttcaagaatcaaattgcaattcaaaaccctaacttcttaaacatcacaattatcaacaacatcaaagttagcccc |
21661254 |
T |
|
| Q |
119 |
tttttccagaattata-gactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
21661255 |
ttttt-cagaattatataactcat-attaaagaaggttagt |
21661293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 13744797 - 13744740
Alignment:
| Q |
48 |
caacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaa |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
13744797 |
caacaatcaaattgcagttcaaacctaacttctataacatccaaattatcaacaacaa |
13744740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 14274124 - 14274184
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14274124 |
ttaattcattggattacctacactttcaacaatcaaattgcaattcaaaaccctaacttct |
14274184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 37539354 - 37539435
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattc-aaacctaacttctattacatcaaaattagcaacaacaacaa |
108 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||| |||||||| ||| | |||||| |||| |||||||||||| |
|
|
| T |
37539354 |
tcattggattacctacactttcaacaatcaaattgaaattctaaacctaatttcattaacatcataatt-tcaacaacaacaa |
37539435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 20006122 - 20005929
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20006122 |
attaattcattcgattacctacactttcaacaatcaaattgcaattcaaacctaacttctataacatcaaaattattaacaacaacaaaattaaaccctt |
20006023 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
20006022 |
ttt-cagaattatagactcatgattaaagaaggctagtcccacccttaccttagattggttaaattttgaattctacaagttttcccttcttctc |
20005929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 45535827 - 45536019
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||| || ||||| |||||||||||| |||||||||||| |
|
|
| T |
45535827 |
ttaattcattggattacctacactttcaacaatcaaattgcaatttaaacctaacttctataacaacagaattatcaacaacaacaagattaaacccttt |
45535926 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45535927 |
tt-cagaattatagactcgtgattaaagaaggttagtcccacccttaccttagattggttaaattctgaattctacaagctttcccttcttctc |
45536019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 19647135 - 19647327
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||||||||||| ||| || |||||||||| |||||||| || |||||||||||| ||||||| || |||||| |||| |||||||||||| |
|
|
| T |
19647135 |
ttaattcattggattacctacattttcaacaatcaatttgcaatttaaccctaacttctatacaatcaaaactattaacaactacaagattaaacccttt |
19647234 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
19647235 |
tt-cagaattatatacttatgattaaagaaggttagtctcacccataccttagattggttaaactctgaattctacaagctttcccttcttctc |
19647327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 45528442 - 45528625
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||| ||| || ||||| |||||||||||| |||||| | ||| |
|
|
| T |
45528442 |
ttaattcatttgattacatacactttcaacaatcaaattgcaatttaaacctaacttctataacaacagaattatcaacaacaacaagattaaa-cattt |
45528540 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| ||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45528541 |
tttcagaattatagactcat---------aggttagtcccacccttaccttagattggttaaattctgaattctacaagctttcccttcttctc |
45528625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 25584364 - 25584280
Alignment:
| Q |
71 |
cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggtta |
156 |
Q |
| |
|
|||||||||||| ||||||||| || || |||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25584364 |
cctaacttctataacatcaaaactatcatcaacgacaaggttaaaccctttttc-agaattatatactcatgattaaagaaggtta |
25584280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 18388403 - 18388317
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
18388403 |
acatcaatttttatattaattcattggattacctacaccttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
18388317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 24884262 - 24884322
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
24884262 |
ttaattcattggattacctacactttcaacaatcaaattgcaattcaaaaccctaacttct |
24884322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 28652717 - 28652567
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||| || ||| |||||| ||||| |||| || ||||| |||||| ||||||||| || ||||||| || |
|
|
| T |
28652717 |
acatcaattattaccttaattcattggattacctactcttttaacaattaaatt-caatctaaccctaatttctataacatcaaaactaacaacaactac |
28652619 |
T |
|
| Q |
107 |
aaa-attaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||| |||||||||||| |||||||| | ||| |||||||| |||||||||| |
|
|
| T |
28652618 |
aaaggctaaacccttttt-cagaattacatacttatgattaatgaaggttagt |
28652567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 22501761 - 22501821
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
22501761 |
ttaattcattggattacctacactttcaacaaacaaattgcaattcaaaaccctaacttct |
22501821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 22509695 - 22509755
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
22509695 |
ttaattcattggattacctacactttcaacaaacaaattgcaattcaaaaccctaacttct |
22509755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 1383803 - 1383743
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| |||| |||||||| || ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
1383803 |
ttaattcatcggattacctactctttcaacaatcaaattgcaattcaaaaccctaacttct |
1383743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1800 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1800
Description:
Target: scaffold1800; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 502 - 701
Alignment:
| Q |
15 |
tattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaa |
114 |
Q |
| |
|
||||| ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
502 |
tattatattaattcattgaattacctacactttcaacaatcaaattgcaattcaaacctaacttctataacatcaaaattatcaacaacaacaaaattaa |
601 |
T |
|
| Q |
115 |
accctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttct |
214 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||| ||||||| |
|
|
| T |
602 |
accattttt-aagaattatagactcatgattaaagaaggttagtcccacccttaccttagattgattaaattatgtattctacaagctttcccttcttct |
700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 3111 - 3299
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttcca |
126 |
Q |
| |
|
|||||| |||||| |||||| ||||||| ||||||||||| ||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||| || |
|
|
| T |
3111 |
tcattgaattacctacactttcaacaattaaattgcaatttaaacctaacttctataacatcaaaactatcaacaactacaaaattaaacccttttt-ca |
3209 |
T |
|
| Q |
127 |
gaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctct |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3210 |
taattatatactcatgattaaagaaggttagtcccacccttaccttagattggttaaattctgaattctacaagctttcccttcttctct |
3299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 38593 - 38399
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa-cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||| |||| ||| |||||||||||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
38593 |
ttaattcattggattacctacactttcaacaatcaaattgtaatttaaaacctaacttctataacatcaaaactattaacaactacaaaattaaaccctt |
38494 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctct |
216 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
38493 |
tttc-agaattatatactcatgattaaagaaggttagtcacacccttaccttagattggttaaattctggattctacaagctttccattcttctct |
38399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 21188199 - 21187991
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||| || |
|
|
| T |
21188199 |
acatcaatttttatattaattcattggattacctacactttcaacaatcaaattgcaatttaaacctaacttctataacatcaaaactatcaacaactac |
21188100 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
||||||||| ||||| | || ||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
21188099 |
aaaattaaatcctttct-caaaattatatactcatgattaaaaaaggttagtcccacccttaccttagattggttaaattctgaattctacaaactttct |
21188001 |
T |
|
| Q |
207 |
tttcttctct |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
21188000 |
cttcttctct |
21187991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 39061219 - 39061357
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||| ||||||| |||||| ||| ||||||||| ||||||||| ||||| |||||| ||||||||| || ||||||| |||| ||||||| |
|
|
| T |
39061219 |
attaattcatcggattacttacactttcaagaatcaaattacaattcaaaaccctaaattctataacatcaaaactatcaacaactacaaggttaaacct |
39061318 |
T |
|
| Q |
119 |
tttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
39061319 |
tttttc-agaattatatactcatgattacagaaggttagt |
39061357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 20708204 - 20708074
Alignment:
| Q |
29 |
attggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttcca |
126 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||||||||| ||||| |||| | |||||| ||||| |||||||| |||| |||| |||||||| || |
|
|
| T |
20708204 |
attggattacttacactttcaagaatcaaattgcaattcaaaaccctaatttctttaacatcacaattatcaacaacatcaaagttaaccccttttt-ca |
20708106 |
T |
|
| Q |
127 |
gaattatag-actcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |
|
|
| T |
20708105 |
gaattatagaactcatg-ttaaagaaggttagt |
20708074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 22350555 - 22350641
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
||||||| | ||| ||||| |||||| |||||| |||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
22350555 |
acatcaatttttatattaattcattgaattacctacaccttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
22350641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 44822281 - 44822221
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
44822281 |
ttaattcattggattacctacactttcaacaatcaaattgcaattcaaaaccctaacttct |
44822221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 12710823 - 12710879
Alignment:
| Q |
77 |
ttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattata |
134 |
Q |
| |
|
|||||| ||||||||| || ||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
12710823 |
ttctataacatcaaaactaacaacaactacaagattaaacccttttt-cagaattata |
12710879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 38887161 - 38887102
Alignment:
| Q |
98 |
aacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||| |||| ||||||||||||||| || |||| | ||| ||||||||||||||||||| |
|
|
| T |
38887161 |
aacaactacaagattaaaccctttttc-aggattacatacttatgattaaagaaggttagt |
38887102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 14477533 - 14477725
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||| ||||| || |||||||||||| ||||||||| || |||| || |||| || ||||||||| |
|
|
| T |
14477533 |
ttaattcattggattacctacactttcaacaatcaaatttcaatttaaccctaacttctataacatcaaaactatcaacgactacaagatcaaacccttt |
14477632 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
14477633 |
tt-cagaattatatactcatgattaaagaaggttagtgccacccttaccttagattggttaaattctgaattctacaagttttcccttcttctc |
14477725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 18462924 - 18463116
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa-cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||| |||| ||| |||||||| ||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
18462924 |
ttaattcattggattacctacactttcaacaatcaaattgtaatttaaaacctaacttttataacatcaaaactattaacaactacaaaattaaaccctt |
18463023 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttct |
214 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||| ||||||| |
|
|
| T |
18463024 |
ttt-cagaattatatactcatgattaaagaaggttagtcccacctttaccttagattggttaaattctcaactctacaagctttcccttcttct |
18463116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 13165034 - 13165169
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||| || |||||| | |||||||| |||||| |
|
|
| T |
13165034 |
ttaattcattggatttcctacactttcaacaatcaaatttcaattaaaatctaacttctataacatcaaaactattaacaactataaaattaaccccttt |
13165133 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|| || ||| || ||||||||||||||||||||||| |
|
|
| T |
13165134 |
tt-cacaatcctatactcatgattaaagaaggttagt |
13165169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 14353951 - 14353817
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||| ||||||| |||||| ||| ||||||||||||||||||| |||||||||| | |||||| ||||| |||||| | |||| ||| ||| |
|
|
| T |
14353951 |
attaattcatcggattacttacactttcaagaatcaaattgcaattcaaaaccctaacttctttaacatcacaattatcaacaatatcaaagttagcccc |
14353852 |
T |
|
| Q |
119 |
tttttccagaattata-gactcatgattaaagaaggtt |
155 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
14353851 |
ttttt--agaattatataactcat-attaaagaaggtt |
14353817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1102 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1102
Description:
Target: scaffold1102; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 2118 - 1910
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaac--ctaacttctattacatcaaaattagcaacaaca |
104 |
Q |
| |
|
||||||||| | | ||||| |||||||||||| |||| | ||| |||| ||||||||||||| ||||||||| | |||||| ||||| ||||||| |
|
|
| T |
2118 |
acatcaaatttcacattaattcattggattacttacacattcaagaatcctattgcaattcaaaattctaacttctttaacatcacaattattaacaaca |
2019 |
T |
|
| Q |
105 |
acaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagcttt |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2018 |
acaaaattaaaccctttttc-agaattatagactcatgattaaagaaggttagtcccaccgttaccttagattggttaaattctgaattctacaagcttt |
1920 |
T |
|
| Q |
205 |
cctttcttct |
214 |
Q |
| |
|
|| ||||||| |
|
|
| T |
1919 |
cccttcttct |
1910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 3160792 - 3160584
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| |||||| |||||| || ||| ||||||||||||||||||| |||||||| |||||| | ||||||| || ||||||| || |
|
|
| T |
3160792 |
acatcaatttttatattaattcattgaattacctactctttcaacaatcaaattgcaatttaaacctaatttctataatatcaaaactatcaacaactac |
3160693 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
||| |||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
3160692 |
aaagttaaacccatttt-tagaattatatactcatgattaaagaaggttagtctcacccttaccttagattggttaaattcagaattctacaagctttcc |
3160594 |
T |
|
| Q |
207 |
tttcttctct |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
3160593 |
cttcttctct |
3160584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 48631233 - 48631425
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||| |||||| |||||| |||||||||| | |||||| || ||| |||||||| ||||||||| || |||||| |||| ||||||||||| |
|
|
| T |
48631233 |
ttaattcattgaattacctacactttcaacaatcaattagcaatttaaccctgacttctataacatcaaaactattaacaactacaagcttaaacccttt |
48631332 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| ||||| |||| | | ||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| ||| | |||||||| |
|
|
| T |
48631333 |
tt-cagaactatatatttatgattaaagaaggttagtcccacccttaccttagattggttaaactctgaattctacaagtttttccttcttctc |
48631425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 50755423 - 50755366
Alignment:
| Q |
48 |
caacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
50755423 |
caacaatcaaattgcaattcaaacctaacttctataacatcaaaattatcaacaacaa |
50755366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 6003082 - 6003222
Alignment:
| Q |
19 |
aaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaac |
116 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| |||||||||| |||||||| ||||| |||| | |||||| ||||| |||||||| |||| ||| | |
|
|
| T |
6003082 |
aaattaattcattggattacttacactttcaagaatcaaattgtaattcaaaaccctaatttctttaacatcacaattatcaacaacatcaaagttagcc |
6003181 |
T |
|
| Q |
117 |
cctttttccagaattatag-actcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6003182 |
ccttttt-cagaattatagaactcat-attaaagaaggttagt |
6003222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 12151098 - 12150907
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||||| ||||| |||||| |||||||||| ||| || | || |||||||||||| ||||||||| || ||||| |||| |||| || || |
|
|
| T |
12151098 |
ttaattcattgggttacctacactttcaacaatcaatttgaaaattaaccctaacttctataacatcaaaactattaacaaatacaagcctaaatccctt |
12150999 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttct |
214 |
Q |
| |
|
||| ||| ||| ||| ||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
12150998 |
ttc-agatacatatactaatgattaaagaaggttagtcccactcttaccttagattggttacactctgaattctacaagctttcccttcttct |
12150907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 13520318 - 13520374
Alignment:
| Q |
52 |
aatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaa |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |
|
|
| T |
13520318 |
aatcaaattgcaattcaaaccaaacttctataacatcaaaattatcaacaacaacaa |
13520374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 21845756 - 21845667
Alignment:
| Q |
68 |
aaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||||| |||||| ||||||||| || |||||| |||| ||||||||||||| ||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
21845756 |
aaacctaatttctataacatcaaaactattaacaactacaagcttaaacccttttt-cagaactatatacttatgattaaagaaggttagt |
21845667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 50350963 - 50350831
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaa-ttaaaccc-tttttc |
124 |
Q |
| |
|
||||||||||||| || ||| |||||| ||||| |||| || ||||| ||||| ||||||||| || ||| ||| ||||| |||||||| ||||| |
|
|
| T |
50350963 |
tcattggattacctacgcttttaacaattaaatt-caatctaaccctaatctctataacatcaaaactaacaaaaactacaaaggttaaacccctttttt |
50350865 |
T |
|
| Q |
125 |
cagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
50350864 |
cagaattatatactcatgattaaagaaggttagt |
50350831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 12155178 - 12155040
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaa---attgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
|||| ||||||| ||||| |||||| |||||||||| ||||||| | || |||||||||||| ||||||||| || |||||| |||| |||| || |
|
|
| T |
12155178 |
ttaattcattgggttacctacactttcaacaatcaattaattgcaaattaaccctaacttctataacatcaaaactattaacaactacaatcctaaatcc |
12155079 |
T |
|
| Q |
119 |
tttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||| ||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
12155078 |
ctttt-cagaaccatatacttatgattaaagaaggttagt |
12155040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 7664 - 7475
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||||||| || ||| || ||||||||||||| ||||| ||||||||||||||| ||||||||| || ||||||| | ||||||||||||||| |
|
|
| T |
7664 |
ttaattcattggatttcctacatttccaacaatcaaatttcaattaaaacctaacttctataacatcaaaactatcaacaactataaaattaaacccttt |
7565 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttctt |
212 |
Q |
| |
|
|| |||||| ||| |||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7564 |
tt-cagaatcatatactcataattaaagaaggttagtcccacccttaccttagattggttaaactctgaattctacaagctttcccttctt |
7475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 18459207 - 18459400
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| | || ||| | ||||||||||||||| |
|
|
| T |
18459207 |
ttaattcattggatttcctacactttcaacaatcaaatttcaattaaaacctaacttctataacatcaaaactgttaaaaactataaaattaaacccttt |
18459306 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|| |||||| ||| |||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
18459307 |
tttcagaatcatatactcatgattaaagtaggttagtcccacccttaccttagattggttaaactctgaattctacaagctttcccttcttctc |
18459400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 24506261 - 24506155
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttcca |
126 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||| || |
|
|
| T |
24506261 |
tcattggattacctacactttcaacaattaaattacaatttaaacctaacttctataacatcaaaactatcaacaactacaaaattaaacccttttt-ca |
24506163 |
T |
|
| Q |
127 |
gaattata |
134 |
Q |
| |
|
|||||||| |
|
|
| T |
24506162 |
gaattata |
24506155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 31166194 - 31166277
Alignment:
| Q |
74 |
aacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||||| | |||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31166194 |
aacttctttaacatcacaattatcaacaacaataaaattaaacccttttt-cagaattatagactcatgattaaagatggttagt |
31166277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 18982318 - 18982418
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaa---cctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttttt |
123 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||| ||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
18982318 |
tcattggattacctacgctttcaacaatcaaattgcaatttaaaaaccctaacttctacagcatcaaaactatcaacaactacaaaattaaacccttttt |
18982417 |
T |
|
| Q |
124 |
c |
124 |
Q |
| |
|
| |
|
|
| T |
18982418 |
c |
18982418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 1818865 - 1818989
Alignment:
| Q |
34 |
attaccgacacttgcaacaatcaaatt-gcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaatta |
132 |
Q |
| |
|
|||||| || ||| |||||||||| || |||||| || ||||| |||||| ||||||||| || |||||| |||| |||||||||||||| |||| || |
|
|
| T |
1818865 |
attacctactctttcaacaatcaattttgcaatttaaccctaatttctataacatcaaaactattaacaactacaagcttaaaccctttttc-agaacta |
1818963 |
T |
|
| Q |
133 |
tagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
1818964 |
tatactcatgattaaagaaggttagt |
1818989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 3007026 - 3006888
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||||||||||| |||||| ||| ||||||||||||||||||| | |||||||| | |||||| ||||| |||||||| |||| ||| ||| |
|
|
| T |
3007026 |
attaattcattggattacttacactttcaagaatcaaattgcaattcaaaaccataacttctttaacatcacaattatcaacaacatcaaagttagcccc |
3006927 |
T |
|
| Q |
119 |
tttttccagaattatag-actcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||| || |||||||| |||||| |||||||||||||||| |
|
|
| T |
3006926 |
ttttt-caaaattatagaactcat-attaaagaaggttagt |
3006888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 13285656 - 13285785
Alignment:
| Q |
29 |
attggattaccgacacttgcaacaatcaaattgcaattcaaacc-taacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccag |
127 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||| | ||| ||| | |||||| |||| |||||||||||| ||||||| ||||| || |
|
|
| T |
13285656 |
attggattacctacactttcaacaatcaaattgaaattcaaaacataatttcattaacatcataattt-caacaacaacaatggtaaaccccttttc-ag |
13285753 |
T |
|
| Q |
128 |
aattat-agactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||| |
|
|
| T |
13285754 |
aattatgaaactcatgattatagaaggttagt |
13285785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 35057450 - 35057581
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattc-aaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttcc |
125 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||| |||||||| ||| | |||||| |||| |||||||||||| ||||||| |||| | |
|
|
| T |
35057450 |
tcattggattacctacactttcaacaatcaaattgaaattcaaaacctaatttcattaacatcataatt-tcaacaacaacaatggtaaacccctttt-c |
35057547 |
T |
|
| Q |
126 |
agaattat-agactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||||| | ||| ||||||| ||||| ||||| |
|
|
| T |
35057548 |
agaattatgaaacttatgattatagaagattagt |
35057581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 18585580 - 18585640
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| |||||| ||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
18585580 |
ttaattcattgaattacatacactttcaacaatcaaattgcaattcaaaatcctaacttct |
18585640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0058 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0058
Description:
Target: scaffold0058; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 59821 - 59613
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| || || |||||||||||||||||| |||||||| |||||| | ||||||| || ||||||| || |
|
|
| T |
59821 |
acatcaatttttatattaattcattggattacctactatttcaacaatcaaattgcaatataaacctaatttctataatatcaaaactatcaacaactac |
59722 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||||| |
|
|
| T |
59721 |
aaagttaaacccttttt-cagaattatatactcatgattaaagaaggttagacccacccttaccttagattggttaagttctaaattatacaagctttcc |
59623 |
T |
|
| Q |
207 |
tttcttctct |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
59622 |
cttcttctct |
59613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 16993 - 17200
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| || ||| ||||||||||||||||| | |||||||| |||||| | ||| ||| || ||||||| || |
|
|
| T |
16993 |
acatcaatttttatattaattcattggattacctactctttcaacaatcaaattgcaaattaaacctaatttctataatatc-aaactatcaacaactac |
17091 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||||||||||||| || || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17092 |
aaagttaaacccttttt-aagaattatatactcatgattaaagaagattcgtcccacccttaccttagattagttaaattctgaattctacaagctttcc |
17190 |
T |
|
| Q |
207 |
tttcttctct |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
17191 |
cttcttctct |
17200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 26524 - 26731
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| || ||| ||||||||||||||||| | |||||||| |||||| | ||| ||| || ||||||| || |
|
|
| T |
26524 |
acatcaatttttatattaattcattggattacctactctttcaacaatcaaattgcaaattaaacctaatttctataatatc-aaactatcaacaactac |
26622 |
T |
|
| Q |
107 |
aaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcc |
206 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||||||||||||| || || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26623 |
aaagttaaacccttttt-aagaattatatactcatgattaaagaagattcgtcccacccttaccttagattagttaaattctgaattctacaagctttcc |
26721 |
T |
|
| Q |
207 |
tttcttctct |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
26722 |
cttcttctct |
26731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0165 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0165
Description:
Target: scaffold0165; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 31831 - 32024
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| |||||||||| | |||||| ||| ||||||||| ||||| |||||||||||||| ||||||||| || |||||| | ||||||||||||||| |
|
|
| T |
31831 |
ttaattcattggattttctacactttcaaaaatcaaatttcaattaaaacctaacttctacaacatcaaaactattaacaactataaaattaaacccttt |
31930 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctct |
216 |
Q |
| |
|
|| |||||| ||| ||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
31931 |
tt-cagaatcatatactcatgattaaagatggttagtctcacccttaccttagattagttaaactctgaattctacaagctttcccttcttctct |
32024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0165; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 32038 - 32084
Alignment:
| Q |
110 |
attaaaccctttttccagaattatagactcatgattaaagaaggttag |
157 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
32038 |
attaaaccctttttc-agaatcatatactcatgattaaagaaggttag |
32084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 49657 - 49766
Alignment:
| Q |
48 |
caacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattatagactcatgattaa |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||| || |||||| || ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
49657 |
caacaatcaaattgcaattcgaacctaacttctataacatcaaaactatcaacaaaaataaaattaaacccttttt-cagaattatggactcatgattaa |
49755 |
T |
|
| Q |
148 |
agaaggttagt |
158 |
Q |
| |
|
||||||||||| |
|
|
| T |
49756 |
agaaggttagt |
49766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 23514 - 23707
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa-cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
|||| ||||| ||||||| |||||| |||||| |||||| |||| ||| |||||||||||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
23514 |
ttaattcatttgattacctacacttttaacaataaaattgtaatttaaaacctaacttctataacatcaaaactattaacaactacaaaattaaaccctt |
23613 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||| ||| |||||||||||| || ||||| || |||||||||||||||| |||||||| |
|
|
| T |
23614 |
ttt-tagaattatatactcatgattaaagaaggtcagtcccacccttaccttagattggtcaaattttggattctacaagctttcccttcttctc |
23707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 28615 - 28807
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||||||||||| ||||| || ||||| | |||| ||| |||| || |||||| |||| ||||||| |||| |
|
|
| T |
28615 |
ttaattcattagattacctacactttcaacaatcaaatttcaatttaaccctaattcctataacaataaaactattaacaactacaagattaaacgcttt |
28714 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
||| ||||||||| ||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
28715 |
ttc-agaattatatacttatgattaaagaaggttagtcccactcttaccttagattggttaaactctgaattctacaggctttcccttcttctc |
28807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 20517137 - 20516994
Alignment:
| Q |
71 |
cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttacc |
170 |
Q |
| |
|
|||||||||| | |||||| ||||| ||| ||||||||||||||||| |||| | ||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
20517137 |
cctaacttctttaacatcacaattatcaagaacaacaaaattaaaccatttt-ctagaattatatacttatgattaaagaaggttagtcccacccttacc |
20517039 |
T |
|
| Q |
171 |
ttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
20517038 |
ttagattggttaaactctgaattctacaagctttcccttcttctc |
20516994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 21678996 - 21678804
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
||||| |||||| |||||| || ||| |||| ||| ||||||||||||||||||| | |||| | ||||||| || ||||||| ||||| ||||||||| |
|
|
| T |
21678996 |
attaattcattgaattacctactctttcaaccatccaattgcaattcaaacctaattgctataatatcaaaactatcaacaactacaaagttaaacccta |
21678897 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
||| || ||||||| || ||| |||| |||| | |||| |||||||||||| |||||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
21678896 |
ttt-cataattataaacccattattagagaa-gctagtcccacccttaccttagattggttaaactctgaattctacaagttttcccttcttctc |
21678804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 22708477 - 22708339
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||||| ||||| |||||| ||| ||||||||||||||| ||| |||||||||| | |||||| ||||| |||||||| |||| ||| ||| |
|
|
| T |
22708477 |
attaattcattgtattacttacactttcaagaatcaaattgcaatttaaaaccctaacttctttaacatcacaattatcaacaacatcaaagttagcccc |
22708378 |
T |
|
| Q |
119 |
tttttccagaattatag-actcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
22708377 |
ttttt-tagaattatagaactcat-attaaagaaggttagt |
22708339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 42265722 - 42265636
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
||||||| | ||| ||||| |||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
42265722 |
acatcaatttttatattaattcattggattacatacaccttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
42265636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 20517208 - 20517159
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa |
70 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20517208 |
attaattcattggattacctacactttcaacaatcaaattgcaattcaaa |
20517159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 21676757 - 21676640
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaac |
106 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||| || ||| |||| || ||||| |||| |||||||| |||||| | ||||||| || ||||||| || |
|
|
| T |
21676757 |
acatcaatttttatattaattcattggattacctactctttcaaccttccaattgaaatttaaacctaatttctataatatcaaaactatcaacaactac |
21676658 |
T |
|
| Q |
107 |
aaaattaaaccctttttc |
124 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
21676657 |
aaagttaaaccctatttc |
21676640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 22345023 - 22345072
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa |
70 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
22345023 |
attaattcattggattacctacactttcaacaatcaaattgcaattcaaa |
22345072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 22356683 - 22356732
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa |
70 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
22356683 |
attaattcattggattacctacactttcaacaatcaaattgcaattcaaa |
22356732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 20879374 - 20879509
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttt |
121 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||| || ||||||| ||| ||||||||| | || ||| |||| ||||||||||| |
|
|
| T |
20879374 |
ttaattcattggattacctacacttttaacaatcaatttgcaatttaacactaacttttataacatcaaaaccattaataactacaagcttaaacccttt |
20879473 |
T |
|
| Q |
122 |
ttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|| |||| ||| ||| ||||||||||||||||||| |
|
|
| T |
20879474 |
tt-tagaaccatatacttatgattaaagaaggttagt |
20879509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 21676507 - 21676458
Alignment:
| Q |
166 |
ttaccttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
21676507 |
ttaccttagattggctaaactctgaattctacaagatttcccttcttctc |
21676458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 21404080 - 21404179
Alignment:
| Q |
115 |
accctttttccagaattatagactcatgattaaagaaggttagtnnnnnnnttaccttagatttgttaaattctgaattctacaagctttcctttcttct |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
21404080 |
accctttttc-agaattatagactcatgattaaagaaggttagtcccatccttaccttagattggttaaattctgaattctacaagttttctcttcttct |
21404178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 21398895 - 21398811
Alignment:
| Q |
78 |
tctattacatcaaaattagcaacaacaacaaaa----ttaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||| ||||||||| || |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
21398895 |
tctataacatcaaaactaacaacaacaacaacaaaggttaaacccttttttcagaattatacactcatgattaaagaaggttagt |
21398811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 21504040 - 21504176
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaa-ttcaaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
|||| ||||||||| ||| || ||| ||||||| || |||||| || || ||||| |||||| ||||||||| || |||||| ||||| |||||||||| |
|
|
| T |
21504040 |
ttaattcattggatcacctactctttcaacaatgaatttgcaaatttaaccctaatttctataacatcaaaactactaacaactacaaacttaaaccctt |
21504139 |
T |
|
| Q |
121 |
tttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||| ||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
21504140 |
ttt-cagaaccatatacttatgattaaagaaggttagt |
21504176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 17875958 - 17876018
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
17875958 |
ttaattcattggattacctacactttcaacaatcaaattgcaattcaaaaccctaacttct |
17876018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 30138234 - 30138174
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
30138234 |
ttaattcattggattgcctacactttcaacaatcaaattgcaattcaaaaccctaacttct |
30138174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 31456752 - 31456800
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa |
70 |
Q |
| |
|
|||| |||||| |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31456752 |
ttaattcattgaattacctacactttcaacaatcaaattgcaattcaaa |
31456800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0139 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 40265 - 40119
Alignment:
| Q |
71 |
cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccaga---attatagactcatgattaaagaaggttagtnnnnnnntt |
167 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||| ||| ||||||||||||| ||| |||||| ||||||||||| ||||||||||| || |
|
|
| T |
40265 |
cctaacttctataacatcaaaactatcaacaactacatggttaaacccttttt-tagaattattatatactcatgattagagaaggttagtcccaccctt |
40167 |
T |
|
| Q |
168 |
accttagatttgttaaattctgaattctacaagctttcctttcttctc |
215 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
40166 |
accttagattggttaaactctgaattctacaagctttcccttcttctc |
40119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 19006 - 18906
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaa---cctaacttctattacatcaaaattagcaacaacaacaaaattaaacccttttt |
123 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||| |||||||| || ||||||| ||||||||||||| ||||| |
|
|
| T |
19006 |
tcattggattacctacactttcaacaatcaaattgcaatttaaaaaccctaacttctatagcatcaaaactatcaacaactacaaaattaaacctttttt |
18907 |
T |
|
| Q |
124 |
c |
124 |
Q |
| |
|
| |
|
|
| T |
18906 |
c |
18906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 16718 - 16623
Alignment:
| Q |
31 |
tggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttc |
124 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||| |||||||||||| |||||||| || ||||||| | |||||||||| ||||||| |
|
|
| T |
16718 |
tggattacctacactttgaacaatcaaattgcaatttaaaaccctaacttctatagcatcaaaactatcaacaactataaaattaaactctttttc |
16623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 28541 - 28456
Alignment:
| Q |
8 |
catcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
|||||| | ||| ||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
28541 |
catcaatttttatattaattcattggattacctacaccttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
28456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1939 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1939
Description:
Target: scaffold1939; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 36 - 164
Alignment:
| Q |
30 |
ttggattaccgacacttgcaacaatcaaattgcaattcaaacc-taacttctattacatcaaaattagcaacaacaacaaaattaaaccctttttccaga |
128 |
Q |
| |
|
|||||||||| || ||| |||||||||| || ||||| |||| |||||||||| ||||||||| || |||||| ||||| | ||||||||||| |||| |
|
|
| T |
36 |
ttggattacctactctttcaacaatcaattttcaattttaaccctaacttctataacatcaaaactattaacaactacaaattaaaacccttttt-caga |
134 |
T |
|
| Q |
129 |
attatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
| ||| ||| ||||||||||||||||||| |
|
|
| T |
135 |
accatatactaatgattaaagaaggttagt |
164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 35677 - 35591
Alignment:
| Q |
7 |
acatcaaatattaaattaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
35677 |
acatcaatttttatattaattcattggattatctacaccttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
35591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 18264 - 18125
Alignment:
| Q |
21 |
attaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaaattaaaccc |
118 |
Q |
| |
|
||||| |||| ||||||| |||||| ||| ||||||||| ||||||||| |||||||||| | |||||| ||||| |||||||| |||| ||| || |
|
|
| T |
18264 |
attaattcatcggattacttacactttcaataatcaaattacaattcaaaaccctaacttctttaacatcacaattatcaacaacatcaaagttagctcc |
18165 |
T |
|
| Q |
119 |
tttttccagaattataga-ctcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
18164 |
tttttttagaattatataactcat-attaaagaaggttagt |
18125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 28460 - 28588
Alignment:
| Q |
29 |
attggattaccgacacttgcaacaatcaaattgcaattcaaacctaacttctattacatcaaaattagcaacaacaacaaaa-ttaaaccctttttccag |
127 |
Q |
| |
|
||||||||||| || ||| |||||| ||||| |||| || ||||| ||||| |||| |||| || ||||||| ||||| |||||||||||||| || |
|
|
| T |
28460 |
attggattacctactcttttaacaattaaatt-caatctaaccctaatctctataacataaaaactaacaacaactacaaaggttaaaccctttttc-ag |
28557 |
T |
|
| Q |
128 |
aattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |
|
|
| T |
28558 |
aattatatactcatgattaaggaaggttagt |
28588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 7346 - 7287
Alignment:
| Q |
52 |
aatcaaattgcaattcaaa--cctaacttctattacatcaaaattagcaacaacaacaaa |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||||| ||||| |||||||| |||| |
|
|
| T |
7346 |
aatcaaattgcaattcaaaaccctaacttctttaacatcacaattatcaacaacatcaaa |
7287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0462 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0462
Description:
Target: scaffold0462; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 1176 - 1270
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattc-aaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||| ||||| |||||||| ||| | ||| |||||||| ||||||| |||| ||||||||||| |
|
|
| T |
1176 |
tcattggattacctagactttcaacaaccaaattgaaattcaaaacctaatttcattaacaacaaaattatcaacaactacaagattaaaccctt |
1270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0462; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 6682 - 6776
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattc-aaacctaacttctattacatcaaaattagcaacaacaacaaaattaaaccctt |
120 |
Q |
| |
|
||||||||||||| | |||| |||||| ||||||| ||||| |||||||| ||| | ||| |||||||| ||||||| |||| ||||||||||| |
|
|
| T |
6682 |
tcattggattacctagactttcaacaaccaaattgaaattcaaaacctaatttcattaacaacaaaattatcaacaactacaagattaaaccctt |
6776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0104 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0104
Description:
Target: scaffold0104; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 14885 - 14926
Alignment:
| Q |
51 |
caatcaaattgcaattcaaacctaacttctattacatcaaaa |
92 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
14885 |
caatcaatttgcaattcaaacctaacttctataacatcaaaa |
14926 |
T |
|
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Target: scaffold0104; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 16905 - 16946
Alignment:
| Q |
51 |
caatcaaattgcaattcaaacctaacttctattacatcaaaa |
92 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
16905 |
caatcaatttgcaattcaaacctaacttctataacatcaaaa |
16946 |
T |
|
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Target: scaffold0308 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 13299 - 13365
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttctattacatcaaa |
91 |
Q |
| |
|
||||||| ||||| ||| | ||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
13299 |
tcattgggttacctacatcttcaacaatcaaattgcaattcaaaaccctaacttctataacatcaaa |
13365 |
T |
|
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Target: scaffold0213 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0213
Description:
Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 19021 - 19110
Alignment:
| Q |
27 |
tcattggattaccgacacttgcaacaatcaaattgcaattc-aaacctaacttctatta-catcaaaattagcaacaacaacaaaattaaac |
116 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||| |||||||| ||| |||| || |||||||| ||||||| |||| ||||||| |
|
|
| T |
19021 |
tcattggattacctacactt-caacaatcaaattgaaattcaaaacctaatttc-attaccaacaaaattatcaacaactacaagattaaac |
19110 |
T |
|
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Target: scaffold0230 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 6945 - 6885
Alignment:
| Q |
22 |
ttaaatcattggattaccgacacttgcaacaatcaaattgcaattcaaa--cctaacttct |
80 |
Q |
| |
|
|||| |||||| ||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
6945 |
ttaattcattgaattacatacactttcaacaatcaaattgcaattcaaaatcctaacttct |
6885 |
T |
|
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Target: scaffold0630 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0630
Description:
Target: scaffold0630; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 9041 - 9100
Alignment:
| Q |
98 |
aacaacaacaaaattaaaccctttttccagaattatagactcatgattaaagaaggttagt |
158 |
Q |
| |
|
|||||| |||| |||||||||||||| ||| |||| | ||| ||||||||||||||||||| |
|
|
| T |
9041 |
aacaactacaagattaaacccttttt-caggattacatacttatgattaaagaaggttagt |
9100 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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