View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_434 (Length: 229)
Name: NF9839A_low_434
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_434 |
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| [»] chr1 (5 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41334738 - 41334966
Alignment:
| Q |
1 |
gaaaaaggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagatttagtgaagcacctggcctacccccttatagaaagc |
100 |
Q |
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| T |
41334738 |
gaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaaagagatgagatttagtgaagaacctggcctacccccttatagaaagc |
41334837 |
T |
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| Q |
101 |
cgcatgatttgaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
200 |
Q |
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| T |
41334838 |
cgcataatataaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
41334937 |
T |
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| Q |
201 |
aaggagtttacaagataaactcaccatga |
229 |
Q |
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| T |
41334938 |
aaggagtttacaagataaactcacaatga |
41334966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 4153966 - 4153787
Alignment:
| Q |
1 |
gaaaaaggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagatttagtgaagcacctggcctacccccttatagaaagc |
100 |
Q |
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|||| |||||||||||||||||| | |||| ||| ||||||| ||| | || || ||| ||||||||||| | | || ||| ||||||||||||| |
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| T |
4153966 |
gaaataggcattcctccaccatgatagccatcaggaaaagaattatgatgaaatgaaatggaatttagtgaagatctcgtcccaccaccttatagaaagc |
4153867 |
T |
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| Q |
101 |
cgcatgatttgaa-aaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatat |
179 |
Q |
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| T |
4153866 |
cgcatgatttgaagaaaggtttggaaaatttatgttttggcagatgttatcaaacacatgtctcctaattttcttaatat |
4153787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 4153707 - 4153783
Alignment:
| Q |
88 |
ccttatagaaagccgcatgatttgaa-aaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctc |
163 |
Q |
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| T |
4153707 |
ccttagagaaagccacatgatttgaagaaaggtttgcaaagtttatgttttggcaggtgttatcaaacatatgtctc |
4153783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1482892 - 1482826
Alignment:
| Q |
1 |
gaaaaaggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagattta |
67 |
Q |
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| T |
1482892 |
gaaagaggcattcctccaccatggtggccattggaaaaagaatcatggtggaatgaaatgaaattta |
1482826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1482561 - 1482605
Alignment:
| Q |
9 |
cattcctccaccatggtggccaatagggaaagaatcatggaggaa |
53 |
Q |
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| T |
1482561 |
cattcctccaccatggtggccatcaggaaaagaatcatggtggaa |
1482605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20920117 - 20920345
Alignment:
| Q |
1 |
gaaaaaggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagatttagtgaagcacctggcctacccccttatagaaagc |
100 |
Q |
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| T |
20920117 |
gaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaatgagatgagatttagtgaagaacctggcctacccccttatagaaagc |
20920216 |
T |
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| Q |
101 |
cgcatgatttgaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
200 |
Q |
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| T |
20920217 |
cgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
20920316 |
T |
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| Q |
201 |
aaggagtttacaagataaactcaccatga |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
20920317 |
aaggagtttacaagataaactcactatga |
20920345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20901654 - 20901882
Alignment:
| Q |
1 |
gaaaaaggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagatttagtgaagcacctggcctacccccttatagaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
20901654 |
gaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaatgagatgagatttagtgaagaacctggccttcccccttatagaaagc |
20901753 |
T |
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| Q |
101 |
cgcatgatttgaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
200 |
Q |
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| T |
20901754 |
cgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttcataatattaggaacatagtcagacaatc |
20901853 |
T |
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| Q |
201 |
aaggagtttacaagataaactcaccatga |
229 |
Q |
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| T |
20901854 |
aaggagtttacaagataaactcactatga |
20901882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 2588236 - 2588402
Alignment:
| Q |
7 |
ggcattcctccaccatggtggccaatagggaaagaatcatggaggaaggagatgagatttagtgaagcacctggcctacccccttatagaaagccgcatg |
106 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||| ||| || ||| |||||||| | | ||| | ||| ||||||| ||||||||| | |
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| T |
2588236 |
ggcattcctccaccatggtggccaacagggaacgaatcatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaaagccgcacg |
2588335 |
T |
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| Q |
107 |
atttgaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
173 |
Q |
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|| |||| ||||||||||| |||| ||||||| | || |||| |||||||||||||| ||| |||| |
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| T |
2588336 |
atctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacatatgtctccaaatattca |
2588402 |
T |
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