View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_439 (Length: 229)

Name: NF9839A_low_439
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_439
NF9839A_low_439
[»] chr1 (3 HSPs)
chr1 (72-174)||(50589807-50589909)
chr1 (1-67)||(50590242-50590308)
chr1 (72-166)||(19598093-19598188)
[»] chr4 (5 HSPs)
chr4 (120-166)||(28966393-28966439)
chr4 (97-172)||(12295595-12295670)
chr4 (105-174)||(46699334-46699403)
chr4 (130-174)||(8254531-8254575)
chr4 (130-174)||(8267949-8267993)
[»] chr2 (4 HSPs)
chr2 (96-143)||(16959470-16959517)
chr2 (97-171)||(22885894-22885968)
chr2 (116-170)||(27739348-27739402)
chr2 (3-67)||(16959050-16959114)
[»] chr5 (1 HSPs)
chr5 (120-174)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 50589909 - 50589807
Alignment:
Q  72 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 171  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  50589909 ttgtgagtatatccactgtgattttttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgtgcttgc 50589810  T
Q  172 tga 174  Q
    |||    
T  50589809 tga 50589807  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50590308 - 50590242
Alignment:
Q  1 gcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 67  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50590308 gcaacttggacgcaatattgttgtggtaccttaaaagtttttgtttcatctgcgtgatcttgagtcg 50590242  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 19598093 - 19598188
Alignment:
Q  72 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgtt-gctactttccttgaagactatcaacctcgttgtcttgctcttgtg 166  Q
    |||||||||||| |  |||| ||  ||||||| |||||||| |||||||| ||| ||||||||| ||||  | |||||||||||||||||||||||    
T  19598093 ttgtgagtatattctttgtggttgattcttcagaatgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttgctcttgtg 19598188  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 28966393 - 28966439
Alignment:
Q  120 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtg 166  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28966393 ttgctactttccttggagactttcaacctcgttgtcttgctcttgtg 28966439  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 12295595 - 12295670
Alignment:
Q  97 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgct 172  Q
    ||||||| |||||||| |||||||| || |||| |||| ||||| | | ||||| |||||||||||||||||||||    
T  12295595 ttcttcagaatgctatggtgatgttactgcttttcttggagacttttagcctcgctgtcttgctcttgtgcttgct 12295670  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 46699403 - 46699334
Alignment:
Q  105 aatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 174  Q
    |||| ||| ||||||||||| ||||||||  ||||| ||| ||||| | |||||||||||||||||||||    
T  46699403 aatgttatggtgatgttgctgctttccttcgagactttcagcctcgctatcttgctcttgtgcttgctga 46699334  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 8254531 - 8254575
Alignment:
Q  130 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 174  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8254531 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8254575  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 8267949 - 8267993
Alignment:
Q  130 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 174  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8267949 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8267993  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 16959470 - 16959517
Alignment:
Q  96 tttcttcaaaatgctatagtgatgttgctactttccttgaagactatc 143  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||||    
T  16959470 tttcttcaaaatgctatggggatgttgttgctttccttgaagactatc 16959517  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 22885968 - 22885894
Alignment:
Q  97 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 171  Q
    |||||| ||||||||  | |||||| || ||||||||  ||||| |||| || ||||||||||||||||||||||    
T  22885968 ttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgtgcttgc 22885894  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 27739348 - 27739402
Alignment:
Q  116 gatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttg 170  Q
    ||||||||| ||||||||| ||||| | | ||| |||||||||||||||||||||    
T  27739348 gatgttgctgctttccttggagactttaagccttgttgtcttgctcttgtgcttg 27739402  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 16959050 - 16959114
Alignment:
Q  3 aacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 67  Q
    ||||||||  |||||||||| | || |||||||| |||  ||||||||||| |||||||||||||    
T  16959050 aacttggagacaatattgttattgttccttaaaaatttacgtttcatctgcatgatcttgagtcg 16959114  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 27712604 - 27712658
Alignment:
Q  120 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 174  Q
    ||||| ||||||||  ||||| ||||||||||||| |||||||||||| ||||||    
T  27712604 ttgcttctttccttagagactttcaacctcgttgtattgctcttgtgcctgctga 27712658  T

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