View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_443 (Length: 229)

Name: NF9839A_low_443
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_443
NF9839A_low_443
[»] chr5 (10 HSPs)
chr5 (1-229)||(8730970-8731198)
chr5 (1-229)||(39183986-39184215)
chr5 (1-165)||(24072132-24072294)
chr5 (17-105)||(22675249-22675337)
chr5 (17-105)||(27713137-27713225)
chr5 (17-78)||(14302382-14302443)
chr5 (18-77)||(7391990-7392048)
chr5 (17-85)||(13954179-13954247)
chr5 (17-85)||(21402782-21402850)
chr5 (16-92)||(31721744-31721820)
[»] chr2 (25 HSPs)
chr2 (1-229)||(25504709-25504937)
chr2 (16-229)||(43816257-43816470)
chr2 (1-160)||(33788502-33788660)
chr2 (1-154)||(22885009-22885161)
chr2 (1-140)||(3745387-3745526)
chr2 (17-160)||(27740043-27740186)
chr2 (17-96)||(15126344-15126423)
chr2 (17-105)||(4471991-4472078)
chr2 (17-80)||(16952332-16952396)
chr2 (17-80)||(17022997-17023061)
chr2 (17-80)||(17060303-17060367)
chr2 (17-90)||(2062957-2063030)
chr2 (145-229)||(13699086-13699170)
chr2 (17-76)||(16960050-16960109)
chr2 (17-78)||(34230269-34230330)
chr2 (17-76)||(10173531-10173591)
chr2 (17-92)||(12793669-12793743)
chr2 (125-160)||(24308597-24308632)
chr2 (23-105)||(27880056-27880137)
chr2 (16-78)||(37770594-37770655)
chr2 (17-78)||(41086749-41086810)
chr2 (17-78)||(915405-915466)
chr2 (184-229)||(22884934-22884979)
chr2 (126-202)||(20572265-20572341)
chr2 (1-85)||(29487183-29487267)
[»] chr1 (14 HSPs)
chr1 (1-224)||(17033639-17033863)
chr1 (5-229)||(42374220-42374444)
chr1 (31-222)||(46603466-46603654)
chr1 (1-229)||(38544538-38544766)
chr1 (17-160)||(19598704-19598847)
chr1 (17-92)||(4651847-4651922)
chr1 (126-229)||(38548859-38548963)
chr1 (17-115)||(50589122-50589220)
chr1 (17-78)||(27102259-27102320)
chr1 (43-78)||(27905501-27905536)
chr1 (18-76)||(31290973-31291031)
chr1 (21-85)||(34774943-34775007)
chr1 (98-151)||(40934015-40934068)
chr1 (2-85)||(6583161-6583243)
[»] chr6 (7 HSPs)
chr6 (1-224)||(33968421-33968641)
chr6 (1-85)||(26215964-26216047)
chr6 (2-93)||(26534652-26534743)
chr6 (1-93)||(9224094-9224186)
chr6 (17-160)||(13098442-13098584)
chr6 (17-85)||(21266181-21266249)
chr6 (17-78)||(20701755-20701816)
[»] chr7 (17 HSPs)
chr7 (5-229)||(22567912-22568136)
chr7 (22-160)||(9107234-9107371)
chr7 (4-229)||(11378931-11379152)
chr7 (17-105)||(48058579-48058667)
chr7 (25-96)||(47456956-47457027)
chr7 (1-153)||(13311892-13312042)
chr7 (67-160)||(12546277-12546370)
chr7 (1-77)||(36449136-36449212)
chr7 (17-105)||(9428031-9428118)
chr7 (185-229)||(28534311-28534355)
chr7 (1-92)||(46133214-46133306)
chr7 (17-92)||(38485623-38485698)
chr7 (1-73)||(1320847-1320919)
chr7 (2-78)||(24324749-24324825)
chr7 (17-78)||(8745221-8745282)
chr7 (21-78)||(3478424-3478481)
chr7 (1-93)||(12480939-12481031)
[»] chr4 (9 HSPs)
chr4 (1-160)||(12296228-12296386)
chr4 (1-140)||(46698674-46698813)
chr4 (17-103)||(28966935-28967021)
chr4 (17-75)||(35800557-35800615)
chr4 (25-96)||(21983755-21983826)
chr4 (17-96)||(38929895-38929974)
chr4 (21-85)||(19815165-19815229)
chr4 (1-93)||(43374031-43374122)
chr4 (15-89)||(39420954-39421028)
[»] chr3 (8 HSPs)
chr3 (1-142)||(5556623-5556764)
chr3 (1-93)||(1652823-1652914)
chr3 (17-103)||(47945774-47945860)
chr3 (67-160)||(25594401-25594494)
chr3 (17-73)||(27399026-27399083)
chr3 (17-85)||(46358331-46358399)
chr3 (1-78)||(14879488-14879565)
chr3 (17-61)||(38488863-38488908)
[»] chr8 (4 HSPs)
chr8 (1-229)||(15906739-15906968)
chr8 (1-165)||(17720571-17720734)
chr8 (17-60)||(32945673-32945716)
chr8 (1-93)||(30236064-30236156)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-229)||(817-1045)
[»] scaffold0200 (1 HSPs)
scaffold0200 (17-78)||(19451-19512)
[»] scaffold0499 (1 HSPs)
scaffold0499 (17-105)||(6626-6714)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8730970 - 8731198
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8730970 gttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagctaattgatatttagaatagcggc 8731069  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8731070 tcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgt 8731169  T
Q  201 ttcgtgaaagactctgttttaggtagtga 229  Q
    |||||||||||||||||||||||| ||||    
T  8731170 ttcgtgaaagactctgttttaggtggtga 8731198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39184215 - 39183986
Alignment:
Q  1 gttctttggttcaggt-tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcgg 99  Q
    ||||||||||||| |  |||||||||| ||||||||||| ||||||||||||||| ||||||  ||||| ||||||||| |||||| ||| |||||| ||    
T  39184215 gttctttggttcaagcatttggttttgagcttttttggtgttctttcggtggaccagaggttgtgaggtagtggaagctgattgatcttttgaatagtgg 39184116  T
Q  100 ctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcg 199  Q
    |||| | |||||| |||||| ||| || ||| || ||||||||||||||||||||| |||| || |  | ||| |||| |||||||||||||||||||||    
T  39184115 ctcagctttggtgttgaggacatggtgattcgttaagaggggtgttattttgggataagtagtggcgatgttggttatggataccgtttttcagtggtcg 39184016  T
Q  200 tttcgtgaaagactctgttttaggtagtga 229  Q
    |||||||| ||| |||||||||||| ||||    
T  39184015 tttcgtgatagagtctgttttaggtggtga 39183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 24072294 - 24072132
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||  | ||| ||| ||||||||| |||||||||||||||||||||| | ||||||| || ||| | || | |||||||||| | |    
T  24072294 gttctttggttcaagtt--gatttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggttgatgctgaatggtctttagaatagtgac 24072197  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgac 165  Q
    ||||| || |||| |||||   | |||||||||||||||  ||||||||||||||||||| ||||    
T  24072196 tcaactttcgtgacgaggaaggggtgtttcatttagaggaatgttattttgggatgagtagtgac 24072132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 22675337 - 22675249
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    ||||||||||||||||  |||| ||||||| |||| |||||||||  ||||||||||||| | |||||| |||||| ||| ||||||||    
T  22675337 tttggttttgggctttaatggtgttctttcagtggtccggaggttgtgaggtggtggaagttgattgatctttagactagtggctcaac 22675249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 27713137 - 27713225
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    ||||||||||||||||| || | |||||||||||| |  ||||||   ||||||||||| || |||||| |||||||||| ||||||||    
T  27713137 tttggttttgggcttttatgttgttctttcggtggtctagaggttgtcaggtggtggaaacttattgatctttagaatagtggctcaac 27713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 14302443 - 14302382
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||  ||||||||||||||||    
T  14302443 tttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggtggtggaagct 14302382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 7392048 - 7391990
Alignment:
Q  18 ttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagc 77  Q
    |||||||||||||||| |||| ||||||||||||| |||||||  ||||||||| |||||    
T  7392048 ttggttttgggcttttatggt-ttctttcggtggatcggaggtcgagaggtggttgaagc 7391990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13954247 - 13954179
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||||||||||||| |||| ||||||||||||| |||| ||| | ||||||||||| || ||||||    
T  13954247 tttggttttgggctttttatggt-ttctttcggtggatcggaagttgaaaggtggtggaaactgattgat 13954179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 21402850 - 21402782
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||||| ||||||| |||| |||||||||||||  ||||||| |||||||||||||| | ||||||    
T  21402850 tttggttttgagctttttatggt-ttctttcggtggattggaggttgagaggtggtggaagttgattgat 21402782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 31721744 - 31721820
Alignment:
Q  16 ttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttaga 92  Q
    ||||||||||||| | ||||||| ||| ||| |||||||||| |||  | ||||||||||| | |||||| ||||||    
T  31721744 ttttggttttgggttgttttggtgttccttcagtggaccggatgttgcgcggtggtggaagttgattgatctttaga 31721820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25504937 - 25504709
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25504937 gttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagctaattgatatttagaatagcggc 25504838  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  25504837 tcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggcttttttgtttattgataccgtttttcagtggtcgt 25504738  T
Q  201 ttcgtgaaagactctgttttaggtagtga 229  Q
    |||||||||||||||||||||||| ||||    
T  25504737 ttcgtgaaagactctgttttaggtggtga 25504709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 43816470 - 43816257
Alignment:
Q  16 ttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatg 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| ||| |||||| |||||||||| |||||    || ||||||    
T  43816470 ttttggttttgggcttttttggtattctttcggtggaccagaggtttaaaggtggtggaggctgattgatctttagaatagtggctctgttttagtgatg 43816371  T
Q  116 aggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactct 215  Q
    |||| | | ||||||||||||||| ||||| ||| |||| ||||| || |  |  ||| ||| ||||||||||||||||||| ||||||||||||| |||    
T  43816370 aggacaaggtgtttcatttagaggagtgttttttcgggaggagtagtggcgatgctgtgtatggataccgtttttcagtggttgtttcgtgaaagagtct 43816271  T
Q  216 gttttaggtagtga 229  Q
     |||||||| ||||    
T  43816270 attttaggtggtga 43816257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 33788660 - 33788502
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    |||||||||||||||||| || |||||| | ||||||| ||||||||||| ||| |||||| |||||||||||||||| |||||| | |||| ||| |||    
T  33788660 gttctttggttcaggttt-ggctttgggttgttttggtgttctttcggtgaaccagaggttgagaggtggtggaagctgattgatctatagattagtggc 33788562  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    ||| | | |||||||||||   | |||||||||||||||||||||||||||||| |||||    
T  33788561 tcagcttaggtgatgaggacggggtgtttcatttagaggggtgttattttgggacgagta 33788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 22885161 - 22885009
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||| ||||||||| | ||||||| ||||||||||||||| |||||| |||||||||||||| | |||||| | |||||||| |||    
T  22885161 gttctttggttcaagttt-ggttttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaagttgattgatctatagaatagtggc 22885063  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttggga 154  Q
    ||    | |||||||||||     ||||||||||||||||||||||||||||||    
T  22885062 tcgttttaggtgatgaggacggtgtgtttcatttagaggggtgttattttggga 22885009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 3745387 - 3745526
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||| | |||||| ||||||||||||||| | ||||||||||||| | |||||| | | |||||||| ||| |||||| |||||||||| |||    
T  3745387 gttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtttaaaagtggtggaggctgattgatctttagaatagtggc 3745486  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggg 140  Q
    ||| | | ||||| ||||| | | ||||||||||||||||    
T  3745487 tcagcatcggtgacgaggacaaggtgtttcatttagaggg 3745526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 27740043 - 27740186
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatga 116  Q
    |||||| ||||| | ||||||| ||||||||||||||| |||||| ||||||||||||| || |||||| | | |||||| |||||||| | ||   |||    
T  27740043 tttggtcttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaaactgattgatctatggaatagtggctcaacttaggcattga 27740142  T
Q  117 ggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    ||| |   |||||||||||||||||||||||| |||||||||||    
T  27740143 ggacaatgtgtttcatttagaggggtgttattctgggatgagta 27740186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 15126423 - 15126344
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatag 96  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||  |||||||||||| || |||||| ||||||||||    
T  15126423 tttggttttgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaaacttattgatctttagaatag 15126344  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 4471991 - 4472078
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    |||| ||||||||||| ||||| |||||| ||||||||||||| ||| ||||||| |||||| |||||| |||||||||| ||||||||    
T  4471991 tttgtttttgggctttattggtgttcttttggtggaccggagg-tcaaaggtggtagaagctgattgatctttagaatagtggctcaac 4472078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 16952396 - 16952332
Alignment:
Q  17 tttggttttgggc-ttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaa 80  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  16952396 tttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaa 16952332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 17023061 - 17022997
Alignment:
Q  17 tttggttttgggc-ttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaa 80  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  17023061 tttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaa 17022997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 17060367 - 17060303
Alignment:
Q  17 tttggttttgggc-ttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaa 80  Q
    ||||||||||| | ||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  17060367 tttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaa 17060303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 2062957 - 2063030
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatattta 90  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||||  ||||| |||||| || |||||| ||||    
T  2062957 tttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggttgtggaaactgattgatcttta 2063030  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 13699170 - 13699086
Alignment:
Q  145 tattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggtagtga 229  Q
    |||||||||||||||| || | ||  || ||||  |||||||||||||||||||||||||| ||||| | |||||||||| ||||    
T  13699170 tattttgggatgagtagtggcgttgctggttatgtataccgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtga 13699086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 16960050 - 16960109
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaag 76  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||||  ||| |||||||||    
T  16960050 tttggttttgggcttatttggtgttctttcggtggaccagaggttgtgagctggtggaag 16960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 34230269 - 34230330
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||| ||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||    
T  34230269 tttgattttgggctttttgtggt-ttctttcggtggatcggaggttgagaggtggtggaagct 34230330  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10173591 - 10173531
Alignment:
Q  17 tttggttttgggctttt-ttggtattctttcggtggaccggaggttcagaggtggtggaag 76  Q
    ||||||||||||||||| ||||| ||||||||||| | |||||||  ||||||||||||||    
T  10173591 tttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaag 10173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 12793743 - 12793669
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttaga 92  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||  | ||||||||||||| | |||| ||||||    
T  12793743 tttggttttgggcttttatggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttaga 12793669  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 24308632 - 24308597
Alignment:
Q  125 tgtttcatttagaggggtgttattttgggatgagta 160  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24308632 tgttttatttagaggggtgttattttgggatgagta 24308597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 27880137 - 27880056
Alignment:
Q  23 tttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    |||||||| ||||| | |||||||||| ||||||||| | |||||||||| ||||| |||||| || ||||||  ||||||||    
T  27880137 tttgggctgttttgttgttctttcggt-gaccggaggatgagaggtggtgaaagctgattgatcttgagaataatggctcaac 27880056  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 37770655 - 37770594
Alignment:
Q  16 ttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||  ||||||| ||||||||    
T  37770655 ttttggttttgggcttttatggt-ttctttcggtgaatcggaggtcgagaggtgttggaagct 37770594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 41086810 - 41086749
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||  ||||||||||||||||    
T  41086810 tttggttttgggctttttatggt-tcctttcggtggatcggaggtcgagaggtggtggaagct 41086749  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 915466 - 915405
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||   ||||| |||||||||||||| ||||||||||  | |||||||||||||    
T  915466 tttggttttggagctttttagtattctttcggtgcaccggaggttgcgcggtggtggaagct 915405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 22884979 - 22884934
Alignment:
Q  184 cgtttttcagtggtcgtttcgtgaaagactctgttttaggtagtga 229  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||    
T  22884979 cgtttgtcagtggtcgtttcgtgaaggagtctgttttaggtggtga 22884934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 20572265 - 20572341
Alignment:
Q  126 gtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgttt 202  Q
    |||||||||||||||||||| ||||| | |||||| || |  |  || |||| |||| |||||||||||||||||||    
T  20572265 gtttcatttagaggggtgttcttttgaggtgagtagtggcgatggtggttatggatatcgtttttcagtggtcgttt 20572341  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29487183 - 29487267
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||| |||||| |||| | ||||||||| || || | |||||||||| |||| ||||||  | ||||||||||||| ||||||    
T  29487183 gttcttcggttcatgtttggtttttgggctgttatgatgttctttcggttgaccagaggttgtgtggtggtggaagctgattgat 29487267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17033639 - 17033863
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttg-gtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcgg 99  Q
    ||||||||||||| |||||||||||||||||||||  || ||||||||| |  || ||||||  |||||| || ||||| |||||| |||||||||  ||    
T  17033639 gttctttggttcaagttttggttttgggcttttttttgtgttctttcggcgatcctgaggttatgaggtgatgcaagctgattgatctttagaataatgg 17033738  T
Q  100 ctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcg 199  Q
    |||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| ||    |  || ||||  ||||||||||| ||||||||    
T  17033739 ctcaactttggtgatgaggacatggtgtttcattcagaggggtgttattttgggattagtagtggtgatgctggttatgtataccgtttttaagtggtcg 17033838  T
Q  200 tttcgtgaaagactctgttttaggt 224  Q
    |||||||||||| | ||||||||||    
T  17033839 tttcgtgaaagagtatgttttaggt 17033863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 42374220 - 42374444
Alignment:
Q  5 tttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaa 104  Q
    ||||||||| ||||||||||||||||| |||||  |||||||||   ||||||| || |||||||||||||||| |||||| |||||||||| |||||||    
T  42374220 tttggttcaagttttggttttgggcttgtttggcgttctttcggcataccggagattgagaggtggtggaagctgattgatctttagaatagtggctcaa 42374319  T
Q  105 ccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttcg 204  Q
    | |||||||||||||   |  ||| | |||| ||||||||||| ||||| | |||| ||      ||| |||| ||||| ||||||||||||||||||||    
T  42374320 ctttggtgatgaggacgaggagttgcttttataggggtgttatcttgggttcagtagtggtgacattggttatggatacagtttttcagtggtcgtttcg 42374419  T
Q  205 tgaaagactctgttttaggtagtga 229  Q
    |||| || | |||||||||| ||||    
T  42374420 tgaaggaatttgttttaggtggtga 42374444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 46603466 - 46603654
Alignment:
Q  31 tttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatgaggatatgatgtttc 130  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || | |||||| | |||||| |  ||||||| |||||||| |||| || ||||||     
T  46603466 ttttgggtattttttcggcggaccggaggttgagaggtggtgggagttgattgatctgtagaattg--gctcaactttggtgataaggacataatgttt- 46603562  T
Q  131 atttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttag 222  Q
    |||||||||||||||||||||||| ||||| || |  | ||| |||| |||| ||| || ||||||||||||||||||  | ||||||||||    
T  46603563 atttagaggggtgttattttgggaagagtagtggcgatgttgattatggataacgtgttccagtggtcgtttcgtgaagaagtctgttttag 46603654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38544766 - 38544538
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||| | |||||||||||| | |||||| || |||| ||| || | ||||| || ||| |||||||||| | |||||| |||||||||| |||    
T  38544766 gttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggagattaagaagtggtggaagatgattgatctttagaatagtggc 38544667  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgac-ttttttgtttattgataccgtttttcagtggtcg 199  Q
    |||   ||| ||||||||    | ||||||||||||||||||||||  |||||||||||| ||||  |   || |||| |||| |||||| ||||| ||     
T  38544666 tcagttttgctgatgagg-gcgggtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttccagtgatca 38544568  T
Q  200 tttcgtgaaagactctgttttaggtagtga 229  Q
    || ||||||||| |||||||||||| ||||    
T  38544567 ttccgtgaaagagtctgttttaggtggtga 38544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 19598704 - 19598847
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatga 116  Q
    |||| ||||||| |||| |||| |||||||||||| |||||||||  ||||||||||||| | |||||| ||||||||| ||||||||| |  | |||      
T  19598704 tttgattttgggtttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttagaataacggctcaacttatgggatac 19598803  T
Q  117 ggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    || ||   |||||| |||||||||| ||||||||||| ||||||    
T  19598804 ggctagagtgtttcttttagaggggggttattttgggttgagta 19598847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 4651847 - 4651922
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttaga 92  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||  | ||||||||||||| | |||| ||||||    
T  4651847 tttggttttgggcttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttaga 4651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 38548963 - 38548859
Alignment:
Q  126 gtttcatttagaggggtgttattttgggatgagtactgacttttt-tgtttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggt 224  Q
    |||| |||||||||||||||| ||||||||||||| ||||  |   || ||||  ||| |||||||||||| ||||||||||||||| ||||||||||||    
T  38548963 gtttgatttagaggggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgtttcgtgaaagagtctgttttaggt 38548864  T
Q  225 agtga 229  Q
     ||||    
T  38548863 ggtga 38548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 50589220 - 50589122
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatg 115  Q
    ||||||||||||||| ||| || ||||||||||||||| ||||||  |||||||| |||| | |||||| ||| ||||||  ||||||| | |||||||    
T  50589220 tttggttttgggcttatttagtgttctttcggtggaccagaggttgtgaggtggtagaagttgattgatctttggaatagtagctcaacttaggtgatg 50589122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 27102259 - 27102320
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    ||||||||||||||||||  |  ||||||||||||| |||||||  ||||||||||||||||    
T  27102259 tttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagct 27102320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 27905501 - 27905536
Alignment:
Q  43 tttcggtggaccggaggttcagaggtggtggaagct 78  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27905501 tttcggtggaccggaggttgagaggtggtggaagct 27905536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31291031 - 31290973
Alignment:
Q  18 ttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaag 76  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||  ||||||||||||||    
T  31291031 ttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggtggtggaag 31290973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 34774943 - 34775007
Alignment:
Q  21 gttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||||||||| |||| ||||||||||| |  ||||||| |||||||||||||||| ||||||    
T  34774943 gttttgggctttttatggt-ttctttcggtgaattggaggttgagaggtggtggaagctgattgat 34775007  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 40934015 - 40934068
Alignment:
Q  98 ggctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttg 151  Q
    |||||||| ||||||| |||||  |||||||||||||||| ||||||| |||||    
T  40934015 ggctcaactttggtgaggaggacttgatgtttcatttagacgggtgttcttttg 40934068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 6583243 - 6583161
Alignment:
Q  2 ttctttggttcaggttttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||| |||| ||||||||||  ||||||| |||| ||||||||||| | |||||||  |||||||||||||||| ||||||    
T  6583243 ttctttggatcag-ttttggttttttgctttttatggt-ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgat 6583161  T

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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33968641 - 33968421
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||||| ||||||  |||||||   |||||| |  |||||| ||||| |||| ||||||||||| |||||| |||||||||| |||    
T  33968641 gttctttggttcaagttttgattttggatttttttg---ttcttttgacggaccgaaggttgagagatggtggaagctgattgatctttagaatagtggc 33968545  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgt 200  Q
    ||||| |||| ||| |||| |   |||||||||||||||||||||||||||||||||||| |||   |  || |||| |||||| |||||||||||||||    
T  33968544 tcaactttggcgataaggacaaagtgtttcatttagaggggtgttattttgggatgagtagtgatgatgctggttatggataccatttttcagtggtcgt 33968445  T
Q  201 ttcgtgaaagactctgttttaggt 224  Q
    || || ||||| ||||||||||||    
T  33968444 tttgtaaaagagtctgttttaggt 33968421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26216047 - 26215964
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||  | ||||||||||||| ||||||    
T  26216047 gttcttcggttcag-ttttggttttgggcttttttggtgttcttttggtggaccggagattgcgcggtggtggaagctgattgat 26215964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 26534743 - 26534652
Alignment:
Q  2 ttctttggttcaggttttggttttgggctttttt-ggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    |||||||||||| |||| |||||||||||||||| ||| |||||||||||||||| |||||  | ||||||||||||| |||||| |||||||    
T  26534743 ttctttggttcaagttt-ggttttgggcttttttaggtgttctttcggtggaccgaaggttgtgcggtggtggaagctgattgatctttagaa 26534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 9224094 - 9224186
Alignment:
Q  1 gttctttggttcaggttttggttttgggctttt-ttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    ||||||||||||| ||||||||||||||||||| |||||  |||||||||| ||||||||||  | ||||||||||||| | |||| |||||||    
T  9224094 gttctttggttca-gttttggttttgggcttttattggtgctctttcggtgcaccggaggttgtgcggtggtggaagctgaatgatctttagaa 9224186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 13098584 - 13098442
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatga 116  Q
    ||||||||| ||||||||| || |||||||||||| | |||||||  | || |||||||| | |||||| |||||||||| |||||| | | || ||||     
T  13098584 tttggtttttggctttttttgtgttctttcggtggtctggaggttgtgtggaggtggaagatgattgatctttagaatagtggctcagcttaggggatgc 13098485  T
Q  117 ggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    || ||   ||||||| | ||||||| ||||||||||| ||||||    
T  13098484 ggctagtgtgtttcactgagagggg-gttattttgggttgagta 13098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 21266181 - 21266249
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||||||||||| ||||| |||||| |||||||| ||| ||  | ||||||||| ||||||||||    
T  21266181 tttggttttgggctttgttggtgttcttttggtggaccagagattgtgcggtggtggaggctaattgat 21266249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 20701816 - 20701755
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||  |||||| |||||||||    
T  20701816 tttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggtagtggaagct 20701755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 22568136 - 22567912
Alignment:
Q  5 tttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaa 104  Q
    ||||||||| |||||| ||||||  ||||| ||| ||||||||| |||||| ||||| |||||||||| || || |||||| |||||||||| | | ||     
T  22568136 tttggttcaagttttgattttggattttttaggtgttctttcggcggaccgaaggttgagaggtggtgaaaactgattgatctttagaatagtgccccag 22568037  T
Q  105 ccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttcg 204  Q
    | ||||||| ||||| ||| ||||||||||  |||||||||||||| ||||||||| ||    |  || |||| ||||||||||||||||||| ||||||    
T  22568036 ctttggtgacgaggacatggtgtttcattttaaggggtgttatttttggatgagtagtggtgatgctggttatggataccgtttttcagtggttgtttcg 22567937  T
Q  205 tgaaagactctgttttaggtagtga 229  Q
    ||||||| |||||||||||| ||||    
T  22567936 tgaaagagtctgttttaggtggtga 22567912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 9107234 - 9107371
Alignment:
Q  22 ttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaaccttggtgatgaggata 121  Q
    |||||||||||||| || ||||||||||||   ||||||| |||||||||||| | |   |||  |||||||||| |||||||| ||||||||||||||     
T  9107234 ttttgggctttttttgtgttctttcggtgggaaggaggttgagaggtggtggatgttgggtgaactttagaatagtggctcaactttggtgatgaggatg 9107333  T
Q  122 tgatgtttcatttagaggggtgttattttgggatgagta 160  Q
     | ||||||||||||||||| ||||||||||||||||||    
T  9107334 gg-tgtttcatttagaggggagttattttgggatgagta 9107371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 11379152 - 11378931
Alignment:
Q  4 ctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctca 103  Q
    |||||||||| |||||||||||||||||||||||| |||||  ||| |||| |||||| | |||||||||| ||| |||||| |||||||||  ||||||    
T  11379152 ctttggttcaagttttggttttgggcttttttggtgttctt--ggttgaccagaggtttataggtggtggaggctgattgatctttagaataatggctca 11379055  T
Q  104 accttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgacttttttgtttattgataccgtttttcagtggtcgtttc 203  Q
    ||    ||||| |||| | | ||||||||||||||||  ||| ||| |||| ||||| || |  |  || || | ||||| ||||||||||||| |||||    
T  11379054 actcctgtgataaggacaaggtgtttcatttagaggg--gttttttcgggaggagtagtggcgatactggttttggatactgtttttcagtggttgtttc 11378957  T
Q  204 gtgaaagactctgttttaggtagtga 229  Q
     |||| || |||||||||||| ||||    
T  11378956 ttgaaggaatctgttttaggtggtga 11378931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 48058667 - 48058579
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    ||||||||||| ||||| || | |||||||||||| | |||||||  ||||||||||||||| |||||| |||||||||| ||||||||    
T  48058667 tttggttttggccttttatgttgttctttcggtggtctggaggttgtgaggtggtggaagctgattgatctttagaatagtggctcaac 48058579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 47457027 - 47456956
Alignment:
Q  25 tgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatag 96  Q
    ||||||||| |||| |||||||||||| ||||| |||  |||||||||||||||||||||| ||||||||||    
T  47457027 tgggcttttatggtgttctttcggtggtccggaagttgtgaggtggtggaagctaattgatctttagaatag 47456956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 13311892 - 13312042
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||  ||| ||||||| ||||||  |||||||| |||||  |||||| ||||||||||| |||| ||||||||||||||||| | |    
T  13311892 gttctttggttcaagtta-ggtgttgggctgttttggcgttctttcgatggactagaggttgagaggtggtgggagctgattgatatttagaatagtgtc 13311990  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttggg 153  Q
    ||| | | ||||| |||||     ||||||||||||||| || ||||||||||    
T  13311991 tcagcttaggtgacgaggacgaagtgtttcatttagaggtgt-ttattttggg 13312042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 12546370 - 12546277
Alignment:
Q  67 gtggtggaagctaattgatatttagaatagcggctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    |||||||||| | |||||| |||||||||| |||||| | | |||||||| ||     ||||||||||||||||||||||||||||||| ||||    
T  12546370 gtggtggaagttgattgatctttagaatagtggctcagcttaggtgatgacgacggagtgtttcatttagaggggtgttattttgggataagta 12546277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36449136 - 36449212
Alignment:
Q  1 gttctttggttcaggttttggttttgggctt-ttttggtattctttcggtggaccggaggttcagaggtggtggaagc 77  Q
    ||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  36449136 gttctttggttcaagttatg-ttttggacttattttggttttctttcggtggatcggaggttgagaggtggtggaagc 36449212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 9428118 - 9428031
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    |||||| ||||||| ||||||| ||||||||||||||| ||||||  || |||||||||||| |||||| | | |||||| ||||||||    
T  9428118 tttggtcttgggctgttttggtgttctttcggtggaccagaggttgtgaagtggtggaagct-attgatctatggaatagtggctcaac 9428031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 28534355 - 28534311
Alignment:
Q  185 gtttttcagtggtcgtttcgtgaaagactctgttttaggtagtga 229  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  28534355 gtttttcagtggtcgtttcgtgaaagagtctgttttaggtggtga 28534311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46133306 - 46133214
Alignment:
Q  1 gttctttggttcaggttttggttttgggctttttt-ggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttaga 92  Q
    ||||| ||||||| |||| | |||||||||||||| ||| ||| ||||||||||||||||||  | ||||| ||||||| |||||| ||||||    
T  46133306 gttctctggttcaagtttggtttttgggctttttttggtgttccttcggtggaccggaggttgcgtggtgggggaagctgattgatctttaga 46133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 38485623 - 38485698
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttaga 92  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||    ||||||||||||| | |||| ||||||    
T  38485623 tttggttttgggcttttttggtgttccttcgatggaccggaggttgcacggtggtggaagctgaatgatctttaga 38485698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1320847 - 1320919
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtgg 73  Q
    ||||||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||  ||||| |||||    
T  1320847 gttctttggctcaagttttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagagggggtgg 1320919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 24324825 - 24324749
Alignment:
Q  2 ttctttggttcaggttttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||| ||| |||||||||||||||||||| |||| |||||| |||||| |||||||  || |||||||||||||    
T  24324825 ttctttggctcaagttttggttttgggctttttatggt-ttctttaggtggatcggaggtcgaggggtggtggaagct 24324749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 8745221 - 8745282
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||  |||||| |||||||||    
T  8745221 tttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggttgtggaagct 8745282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3478424 - 3478481
Alignment:
Q  21 gttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||| ||||| ||||||||||||| ||||| |  |||||||| |||||||    
T  3478424 gttttgggctttgttggtgttctttcggtggatcggagatcgagaggtggcggaagct 3478481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12480939 - 12481031
Alignment:
Q  1 gttctttggttcaggttttggttttgggctttttt-ggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    ||||||||||||| | ||||||||| ||||||||| ||| |||||||||||||| |||| ||  | ||||||||| | | |||||| |||||||    
T  12480939 gttctttggttcaag-tttggtttttggcttttttaggtgttctttcggtggactggagattgtgcggtggtggaggatgattgatttttagaa 12481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12296228 - 12296386
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||  ||| | |||||| ||| |||    
T  12296228 gttctttggttcaagttt-gattttgggcttttttggtgttctttcggtggaccggaggttgtgtggtggtggaagctggttgttctttagagtagtggc 12296326  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    ||||| | |||||||||||     ||||||||||||||||||||||||||||||||||||    
T  12296327 tcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagta 12296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 46698813 - 46698674
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||||| ||||||||| ||| ||| |||||||||| ||  ||||||| | | |||||||||||| ||| || |||||||||| |||    
T  46698813 gttctttggttcaagttttgtttttgggctgtttaggtgttctttcggtagattggaggtttaaaagtggtggaagctgattcatctttagaatagtggc 46698714  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggg 140  Q
    ||  | ||||||||||||| | | ||||||||||||||||    
T  46698713 tcggctttggtgatgaggacaaggtgtttcatttagaggg 46698674  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 28966935 - 28967021
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctca 103  Q
    |||||||||||||||||  | | |||||||||||| |||||||||  ||||||||||||||| |||||| | |||||||| ||||||    
T  28966935 tttggttttgggcttttaggatgttctttcggtggtccggaggttgtgaggtggtggaagctgattgatctctagaatagtggctca 28967021  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 35800557 - 35800615
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaa 75  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||    
T  35800557 tttggttttgggcttttttggtgttctttcggtggaccggaggtttcgcggtggtggaa 35800615  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 21983826 - 21983755
Alignment:
Q  25 tgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatag 96  Q
    ||||||||| |||| |||||||||||| |||||||||  ||||||||||||| | |||||| ||||||||||    
T  21983826 tgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttagaatag 21983755  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 38929895 - 38929974
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatag 96  Q
    |||| |||||||||||| |||| |||||||||||  |||||||||  ||||||||||||| | |||||| ||| ||||||    
T  38929895 tttgattttgggcttttatggtgttctttcggtgatccggaggttgtgaggtggtggaagttgattgatctttggaatag 38929974  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 19815229 - 19815165
Alignment:
Q  21 gttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    |||||||| ||  ||||| |||||||||||||||||||||  |||| ||||||||||||| ||||    
T  19815229 gttttgggtttgattggtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgat 19815165  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43374122 - 43374031
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    ||||||||||||| |||| | ||| | | ||||||||| ||||||| ||||| ||||||||  | ||||||||||||| |||||| |||||||    
T  43374122 gttctttggttcaagttt-gatttcgaggttttttggtgttctttcagtggatcggaggttgcgcggtggtggaagctgattgatctttagaa 43374031  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 39421028 - 39420954
Alignment:
Q  15 gttttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatattt 89  Q
    |||||||||||||||||||| |||| || |||||||||| ||||| |  ||||||||||||| || ||||||||||    
T  39421028 gttttggttttgggctttttatggtttt-tttcggtggatcggagatcgagaggtggtggaaactgattgatattt 39420954  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 5556623 - 5556764
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||| |||  ||||| ||||||| || ||     
T  5556623 gttctttggttcaagttttggttttgggcttttcaggtgttctttcggtggaccggaggtttagaggtggtggaggctggttgatctttagaaaagtggt 5556722  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggt 142  Q
    ||| | |||||||| |||||| | ||||||| ||||||||||    
T  5556723 tcagctttggtgataaggataaggtgtttcagttagaggggt 5556764  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1652914 - 1652823
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||| | | |||| |||||||    
T  1652914 gttctttggttcaagttt-ggttttgggcttttttggtgttctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttagaa 1652823  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 47945774 - 47945860
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctca 103  Q
    |||| |||||||||||| |||| |||||||||||| |||||| ||  ||||||||||||| |||||||| ||| |||||| ||||||    
T  47945774 tttgattttgggcttttatggtgttctttcggtggtccggagattgtgaggtggtggaagttaattgatcttttgaatagtggctca 47945860  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 25594494 - 25594401
Alignment:
Q  67 gtggtggaagctaattgatatttagaatagcggctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagta 160  Q
    |||||||||||  |||||| |||||||||| |||||||| |||| || |||||     |||| |||||||||| ||||||| ||||||||||||    
T  25594494 gtggtggaagcggattgatctttagaatagtggctcaactttggagacgaggacggagtgttccatttagaggagtgttatcttgggatgagta 25594401  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27399026 - 27399083
Alignment:
Q  17 tttggttttgggctttttt-ggtattctttcggtggaccggaggttcagaggtggtgg 73  Q
    ||||||||||||||||||| ||| |||||| |||||||| |||||| |||||||||||    
T  27399026 tttggttttgggctttttttggtgttcttttggtggaccagaggttgagaggtggtgg 27399083  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 46358399 - 46358331
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgat 85  Q
    ||||| |||||||| ||||| | ||||||| |||||  ||||||| |||||||||||||||| ||||||    
T  46358399 tttggctttgggctgttttgatgttctttcagtggattggaggttgagaggtggtggaagcttattgat 46358331  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14879488 - 14879565
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||| |||| ||| ||||||||||||| |||||| |||| |||||||||||||  ||||||  ||||||||||||||||    
T  14879488 gttcgttggatcaagttttggttttggactttttatggt-ttctttcggtggataggaggtcgagaggtggtggaagct 14879565  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 38488863 - 38488908
Alignment:
Q  17 tttggttttgggctttttt-ggtattctttcggtggaccggaggtt 61  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||    
T  38488863 tttggttttgggctttgttaggtgttctttcggtggaccggaggtt 38488908  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15906739 - 15906968
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtatt-ctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcgg 99  Q
    ||||||||||||| |||| |||||||||||  ||| || || ||||| ||||||| |||||| |||||||||||||| | |||||| | ||||||||  |    
T  15906739 gttctttggttcaagttt-ggttttgggctgatttagtgtttctttcagtggaccagaggttaagaggtggtggaagatgattgatttatagaatagtag 15906837  T
Q  100 ctcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgac-ttttttgtttattgataccgtttttcagtggtc 198  Q
    |||||| | ||||||||||| |   ||||| |||||||| ||||||||||||||||||||| || |    | || |||| ||||| ||||||||||||||    
T  15906838 ctcaacttaggtgatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggcaacatgtggttatggatactgtttttcagtggtc 15906937  T
Q  199 gtttcgtgaaagactctgttttaggtagtga 229  Q
    |||||||||| |  |||||||| ||| ||||    
T  15906938 gtttcgtgaagggatctgtttttggtggtga 15906968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17720734 - 17720571
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    |||||||||||||  ||| ||||||||||| ||||||| ||||||||||||||  |||||| |||||||||||||| | |||||| |||||||||| |||    
T  17720734 gttctttggttcaa-tttaggttttgggctgttttggtgttctttcggtggacttgaggttgagaggtggtggaagttgattgatctttagaatagtggc 17720636  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgac 165  Q
    ||||  |  ||||||||||     |||||||||||||||||| |  ||||||| |||||| ||||    
T  17720635 tcaaattaagtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgac 17720571  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 32945716 - 32945673
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggt 60  Q
    |||||||||||||||||||| | |||||||||||||| ||||||    
T  32945716 tttggttttgggcttttttgatgttctttcggtggactggaggt 32945673  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30236156 - 30236064
Alignment:
Q  1 gttctttggttcaggttttggttttgggctttttt-ggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaa 93  Q
    ||||||||||||| |||| |||||||||||||||| ||| || | |||||||||| ||| ||  |  |||||||||||| |||||| |||||||    
T  30236156 gttctttggttcaagttt-ggttttgggctttttttggtgttgtatcggtggaccagagattgcgcagtggtggaagctgattgatctttagaa 30236064  T

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Target: scaffold1613 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1045 - 817
Alignment:
Q  1 gttctttggttcaggttttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggc 100  Q
    ||||||||||| | |||||||||||| | |||||| || |||| ||| || | ||||| || ||| |||||||||| | |||||| |||||||||| |||    
T  1045 gttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggagattaagaagtggtggaagatgattgatctttagaatagtggc 946  T
Q  101 tcaaccttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtactgac-ttttttgtttattgataccgtttttcagtggtcg 199  Q
    |||   ||| ||||||||    | ||||||||||||||||||||||  |||||||||||| ||||  |   || |||| |||| |||||| ||||| ||     
T  945 tcagttttgctgatgagg-gcgggtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttccagtgatca 847  T
Q  200 tttcgtgaaagactctgttttaggtagtga 229  Q
    || ||||||||| |||||||||||| ||||    
T  846 ttccgtgaaagagtctgttttaggtggtga 817  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 19451 - 19512
Alignment:
Q  17 tttggttttgggcttttt-tggtattctttcggtggaccggaggttcagaggtggtggaagct 78  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||  |||| |||||||||||    
T  19451 tttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagagttggtggaagct 19512  T

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Target: scaffold0499 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 6626 - 6714
Alignment:
Q  17 tttggttttgggcttttttggtattctttcggtggaccggaggttcagaggtggtggaagctaattgatatttagaatagcggctcaac 105  Q
    ||||||||| ||||||||| || |||||||||||| |  ||||||  | || |||||||| | |||| | |||||||||| ||||||||    
T  6626 tttggtttttggctttttttgtgttctttcggtggtctagaggttgtgtggaggtggaagatgattggtctttagaatagtggctcaac 6714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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