View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_446 (Length: 228)
Name: NF9839A_low_446
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_446 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 4236138 - 4235918
Alignment:
| Q |
2 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcat |
101 |
Q |
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| T |
4236138 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcat |
4236039 |
T |
|
| Q |
102 |
ctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
201 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236038 |
ctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
4235939 |
T |
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| Q |
202 |
ttttgtcgcggcggtttcagc |
222 |
Q |
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||||||||||||||||||||| |
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| T |
4235938 |
ttttgtcgcggcggtttcagc |
4235918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
2 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
65 |
Q |
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| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6185263 - 6185042
Alignment:
| Q |
1 |
ggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgca |
100 |
Q |
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| T |
6185263 |
ggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgca |
6185164 |
T |
|
| Q |
101 |
tctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataa |
200 |
Q |
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||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |
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| T |
6185163 |
tctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatca |
6185064 |
T |
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| Q |
201 |
attttgtcgcggcggtttcagc |
222 |
Q |
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|||| || |||||||||||||| |
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| T |
6185063 |
atttcgttgcggcggtttcagc |
6185042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 19593017 - 19592829
Alignment:
| Q |
6 |
tgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctat |
105 |
Q |
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||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19593017 |
tgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatattagatgacaattttgcatctat |
19592918 |
T |
|
| Q |
106 |
agtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaatt |
203 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
19592917 |
agtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 38357076 - 38356883
Alignment:
| Q |
8 |
aaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatag |
107 |
Q |
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|||||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | |
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| T |
38357076 |
aaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttg |
38356977 |
T |
|
| Q |
108 |
taacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
201 |
Q |
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||| ||| ||| |||||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
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| T |
38356976 |
caactgttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
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