View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_447 (Length: 228)
Name: NF9839A_low_447
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_447 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 33606626 - 33606428
Alignment:
| Q |
19 |
tcaaagcaaaacatatatggaagtcaaaggaaccggaacagcaaaccaatgtccaaccattgatggaggagtagactcattctccttcaaaccaggaaaa |
118 |
Q |
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| T |
33606626 |
tcaaagcaaaacatatttggaagtcaaaggaaccggaacagcaaaccaatgtccaaccattgatggaggagtagactcattctccttcaaaccaggaaaa |
33606527 |
T |
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| Q |
119 |
tacaacgccaagaaattctgcctcaaaccaacttcattcacagttaaagcagaaggtgtaaccaagaacaccccacttgcattccaaaacaccaaactc |
217 |
Q |
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| T |
33606526 |
tacaacgccaagaaattctgcctcgaaccaacttcattcacagttaaagcagaaggtgtaaccaagaacaccccacttgcattccaaaacaccaaactc |
33606428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 6962688 - 6962827
Alignment:
| Q |
23 |
agcaaaacatatatggaagtcaaaggaaccggaacagcaaaccaatgtccaaccattgatggaggagtagactcattctccttcaaaccaggaaaataca |
122 |
Q |
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||||||||||| | ||||| |||||||| |||||||| |||||||||||||| ||||| || ||| ||||||||||||||||| |||||||||||| |
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| T |
6962688 |
agcaaaacatacttagaagtgaaaggaacaggaacagctaaccaatgtccaacaattgaaggtggatccgactcattctccttcaagtcaggaaaataca |
6962787 |
T |
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| Q |
123 |
acgccaagaaattctgcctcaaaccaacttcattcacagt |
162 |
Q |
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| T |
6962788 |
atgcaaaaaaattctgccttgaaccaacttcattcacagt |
6962827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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