View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_448 (Length: 228)
Name: NF9839A_low_448
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_448 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38567070 - 38567284
Alignment:
| Q |
8 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcatcaggtcttgcaggataactgaaata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38567070 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
38567169 |
T |
|
| Q |
108 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567170 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38567269 |
T |
|
| Q |
208 |
ttgtaagccgccgcc |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38567270 |
ttgtaagccgccgcc |
38567284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 38525945 - 38526162
Alignment:
| Q |
8 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcatcaggtcttgcaggataactgaaata |
107 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38525945 |
ttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaata |
38526044 |
T |
|
| Q |
108 |
aacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38526045 |
aacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38526144 |
T |
|
| Q |
208 |
ttgtaagccgccgcctga |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38526145 |
ttgtaagccgccgcctga |
38526162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University