View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_45 (Length: 414)
Name: NF9839A_low_45
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_45 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 3659753 - 3659360
Alignment:
| Q |
5 |
agtttggagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtggaggacagtggaggatcaacacgtagtagcgatga |
104 |
Q |
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| T |
3659753 |
agtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtgggggacagtggaggatcaacacgtagtagcgatga |
3659654 |
T |
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| Q |
105 |
cggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagt |
204 |
Q |
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| T |
3659653 |
cggagatatagtg---------------gcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagt |
3659569 |
T |
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| Q |
205 |
aaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaat |
304 |
Q |
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| T |
3659568 |
aaaggcgtgaaaattttgacgtgaaatgtcattacattatattcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaat |
3659469 |
T |
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| Q |
305 |
ttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggc |
404 |
Q |
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| T |
3659468 |
ttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattgga |
3659370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 58 - 402
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
58 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
157 |
Q |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
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| Q |
158 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
257 |
Q |
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| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
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| Q |
258 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
357 |
Q |
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| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
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| Q |
358 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
402 |
Q |
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| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 58 - 315
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
58 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
157 |
Q |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
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| Q |
158 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
257 |
Q |
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| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
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| Q |
258 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
315 |
Q |
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| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
77 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
176 |
Q |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
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| Q |
177 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
218 |
Q |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
160 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
218 |
Q |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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