View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_452 (Length: 227)
Name: NF9839A_low_452
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_452 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 37728379 - 37728181
Alignment:
| Q |
17 |
catcattcttcatctcttccggcgcaagttcatacgaatccagttcaccgagacttcctccagcttcagcctctctttcaacaatctacatgaaaattgc |
116 |
Q |
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| T |
37728379 |
catcattcttcatctcttccggcgcaagttcatacgaatccagttcaccgagacttcctccagcttcagcctctctttcaacaatctacatgaaaattgc |
37728280 |
T |
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| Q |
117 |
attacatcacaccattgaaacaggcaaaaagcacaacatcagagcctgatattgcaaaataagttttcatggctttcttcataaaaagcaacaccaaac |
215 |
Q |
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| T |
37728279 |
attacatcacaccattgaaacaggcaaaaagcacaacatcagagcctgatattgcaaaataagttttcatggctttcttcataaaaagcaacaccaaac |
37728181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 54099941 - 54099772
Alignment:
| Q |
46 |
tcatacgaatccagttcaccgagacttcctccagcttcagcctctctttcaacaatctacatgaaaattgcattacatcacaccattgaaacaggcaaaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
54099941 |
tcatacgaatccagttcaccgagacttcctccagcttcagcctctctttcaacaatctacgtgaaaattgcattacatcacatcattgaaacaggcaaaa |
54099842 |
T |
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| Q |
146 |
agcacaacatcagagcctgatattgcaaaataagttttcatggctttcttcataaaaagcaacaccaaac |
215 |
Q |
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| T |
54099841 |
agcacaatatcaaagcctgatattgcgaaataagttttcatggctttcttcatataaagcaacatcaaac |
54099772 |
T |
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