View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_453 (Length: 227)
Name: NF9839A_low_453
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_453 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 55350819 - 55350608
Alignment:
| Q |
11 |
aagacgctatcaagtctactcatggccaccacattagaatgaaaccacgtaaatttccttccaagcgtattttgatcttccaactcaaccttatcaataa |
110 |
Q |
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| T |
55350819 |
aagactctatcaattctactcatggccaccccattagaatgaaaccacgtaaacttccttccaagcgtatttttatcttccaactcaaccttatcaaaaa |
55350720 |
T |
|
| Q |
111 |
aatcattaaagagtctcatctccctacgatgcccactaggtaccacctcttgaaccccccttctctcggcacgagcacgcaccgaatcaaaatctcccat |
210 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
55350719 |
aatcattaaagagtctcatctccctacgatacccgctaggttccacctcttgaaccccccttctctcgtcacgagcacgcaccgaattaaaatctcccat |
55350620 |
T |
|
| Q |
211 |
caaacaccaaac |
222 |
Q |
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|| | ||||||| |
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| T |
55350619 |
catagaccaaac |
55350608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 6229186 - 6229060
Alignment:
| Q |
11 |
aagacgctatcaagtctactcatggccaccacattagaatgaaaccacgtaaatttccttccaagcgtattttgatcttccaactcaaccttatcaataa |
110 |
Q |
| |
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||||| ||||||| ||||||||| |||||| | |||||||| |||||||| || ||||| ||||||| ||||||||||||||| || | |||||| | || |
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| T |
6229186 |
aagactctatcaattctactcatagccaccccgttagaatggaaccacgtgaacttcctaccaagcggattttgatcttccaattctatcttatcgaaaa |
6229087 |
T |
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| Q |
111 |
aatcattaaagagtctcatctccctac |
137 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
6229086 |
aatcattaaaaagtctcatctccctac |
6229060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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