View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_457 (Length: 226)
Name: NF9839A_low_457
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_457 |
 | |
|
| [»] scaffold0559 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 40805878 - 40806076
Alignment:
| Q |
13 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805878 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggag |
40805977 |
T |
|
| Q |
113 |
agaatttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttaaaaccccc |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
40805978 |
agaattcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
40806076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 8765 - 8566
Alignment:
| Q |
13 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttt-gga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8765 |
gaagaatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttttgga |
8666 |
T |
|
| Q |
112 |
gagaatttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttaaaaccccc |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8665 |
gagaattcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
8566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University