View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_462 (Length: 225)

Name: NF9839A_low_462
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_462
NF9839A_low_462
[»] chr3 (2 HSPs)
chr3 (2-222)||(3968675-3968895)
chr3 (2-222)||(3999910-4000130)
[»] chr1 (1 HSPs)
chr1 (2-225)||(13987354-13987577)
[»] chr2 (2 HSPs)
chr2 (14-222)||(9560925-9561136)
chr2 (77-129)||(42048418-42048470)
[»] chr7 (3 HSPs)
chr7 (14-218)||(46262256-46262458)
chr7 (68-222)||(24931690-24931842)
chr7 (5-152)||(27993664-27993812)
[»] chr4 (2 HSPs)
chr4 (5-224)||(40813909-40814131)
chr4 (14-135)||(37707492-37707612)
[»] chr6 (2 HSPs)
chr6 (29-142)||(7546580-7546692)
chr6 (67-141)||(12129036-12129110)
[»] chr5 (1 HSPs)
chr5 (74-208)||(18557288-18557422)
[»] chr8 (2 HSPs)
chr8 (77-140)||(40531053-40531116)
chr8 (88-130)||(31180038-31180079)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 3968675 - 3968895
Alignment:
Q  2 caaaacctatgtaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataa 101  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3968675 caaaatctatctaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacagaa 3968774  T
Q  102 acaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctagactattgtaccatcttgcatcgcggag 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  3968775 acaaaccaaaacaagccatgaaatcaaccaccacaagaaccaccacaaacacaatgttggcgccaccctctggactattgtaccatcttacgtcgcggag 3968874  T
Q  202 gagaaaacatccacccatcca 222  Q
    ||||||||| |||||||||||    
T  3968875 gagaaaacacccacccatcca 3968895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 4000130 - 3999910
Alignment:
Q  2 caaaacctatgtaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataa 101  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4000130 caaaatctatctaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacagaa 4000031  T
Q  102 acaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctagactattgtaccatcttgcatcgcggag 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  4000030 acaaaccaaaacaagccatgaaatcaaccaccacaagaaccaccacaaacacaatgttggcgccaccctctggactattgtaccatcttacgtcgcggag 3999931  T
Q  202 gagaaaacatccacccatcca 222  Q
    ||||||||| |||||||||||    
T  3999930 gagaaaacacccacccatcca 3999910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 13987577 - 13987354
Alignment:
Q  2 caaaacctatgtaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataa 101  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  13987577 caaaacctatctaaaaactcggctcaccaaaaacctgatgccaaattcataagacatgaacggcagaacagtagagcaagtcgatccagcttgaacagaa 13987478  T
Q  102 acaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctagactattgtaccatcttgcatcgcggag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||| | | | ||||    
T  13987477 acaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacacattgtcgacgccaccctctggactattgtaccatcttacgttgtggag 13987378  T
Q  202 gagaaaacatccacccatccaagg 225  Q
    |||||||||| |||||||||||||    
T  13987377 gagaaaacattcacccatccaagg 13987354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 9560925 - 9561136
Alignment:
Q  14 aaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaa- 112  Q
    |||||||| || |||||||| | |||||||||||||||||||||  ||||    || | |||||||| ||||||||||| ||||| |||||||||||||     
T  9560925 aaaaactcagcccaccaaaatctagatgccaaattcataagacagaaacgatgaaaaaatagcgcaaatcgatccagctcgaacaaaaacaaaccaaaaa 9561024  T
Q  113 caagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctaga--ctattgtaccatcttgcatcgcggaggagaaaaca 210  Q
    |||||||  ||||||||||||||||||||| |||||||||| || |  |||||||||||| ||  | | |||||| |||| | ||||||||||||||||     
T  9561025 caagccacaaaatcaaccaccacaagcaccgccacgaacatcgttttagcgccaccctctggaccccactgtaccgtcttacgtcgcggaggagaaaacc 9561124  T
Q  211 tccacccatcca 222  Q
    ||||||||||||    
T  9561125 tccacccatcca 9561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 42048418 - 42048470
Alignment:
Q  77 gcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaac 129  Q
    |||| |||| |||||| ||||||||||||||||||||||||||  ||||||||    
T  42048418 gcaaatcgaaccagctcgaacataaacaaaccaaaacaagccacaaaatcaac 42048470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 46262256 - 46262458
Alignment:
Q  14 aaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaac 113  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||  |||||  |||||||||| ||| |||||||||||  |||| ||||||||||||||    
T  46262256 aaaaactcggcccaccaaaacccagatgccaaattgataagacagaaacggtggaacagtagctcaaatcgatccagctcaaacaaaaacaaaccaaaac 46262355  T
Q  114 aagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctagactattgtaccatcttgcatcgcggaggagaaaacatcc 213  Q
    || |||   |||||||||||||||||||| ||| |||||  |  ||  ||||| ||||||||| ||||| || ||||   |||||||||||||||| |||    
T  46262356 aa-ccacataatcaaccaccacaagcaccgccatgaacaccggttcaacgcca-cctctagaccattgttccttcttatgtcgcggaggagaaaacctcc 46262453  T
Q  214 accca 218  Q
    |||||    
T  46262454 accca 46262458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 24931842 - 24931690
Alignment:
Q  68 aacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccac 167  Q
    |||||||| |||| | ||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||||||| | |||  ||  || || |||||||    
T  24931842 aacagtagtgcaaattgatccagctcgaacagaaacaaatcaaaacaagccacaaaatcaaccaccacaagcaccgctacg--caccgtttcagcgccac 24931745  T
Q  168 cctctagactattgtaccatcttgcatcgcggaggagaaaacatccacccatcca 222  Q
    ||| | ||| | ||||| ||||  |||||||||||||||||| ||||||||||||    
T  24931744 cctttggaccactgtactatctaacatcgcggaggagaaaacctccacccatcca 24931690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 27993664 - 27993812
Alignment:
Q  5 aacctatgtaaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaa-cataaac 103  Q
    |||||||  ||||||||||| ||||| || |||||||||||||||| ||||||  ||| |  ||| |||||| ||| |||||| |||| ||| || |  |    
T  27993664 aacctatccaaaaactcggcccaccataatccagatgccaaattcacaagacagaaacagtggaatagtagcacaaatcgatctagctcgaaacagattc 27993763  T
Q  104 aaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaaca 152  Q
    ||||||||||||||||  ||||||| || |||||||||| |||||||||    
T  27993764 aaaccaaaacaagccacaaaatcaaacatcacaagcaccgccacgaaca 27993812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 40813909 - 40814131
Alignment:
Q  5 aacctatgtaaaaactcggctcaccaaaaaccagatgccaaattcataag-acatgaacggcagaacagtagcgcaagtcgatccagcttgaacataaac 103  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||  | | | |  || ||  ||||||||||||||  ||| |||||| ||| ||||||    
T  40813909 aacctatccaaaaactcggcccaccataaaccagatgccaaattcgaaggcagagaaaaggtggaacagtagcgcaaaacgaaccagctcgaatataaac 40814008  T
Q  104 aaacc-aaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctctagactattgtaccatcttgcatcgcggagg 202  Q
    ||||| |||||||| ||| ||||||||||||||||| |||| || |||||  || ||  |||||||||||| || |   ||||||||| ||||||| |||    
T  40814009 aaaccaaaaacaagtcataaaatcaaccaccacaagtaccatcatgaacaccgtttcaacgccaccctctaaaccaccataccatcttacatcgcgtagg 40814108  T
Q  203 ag-aaaacatccacccatccaag 224  Q
    || ||||| |||| |||||||||    
T  40814109 agaaaaacctccaaccatccaag 40814131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 37707492 - 37707612
Alignment:
Q  14 aaaaactcggctcaccaaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaac 113  Q
    ||||||||| | ||||||||||||||||||||  ||| ||||||   ||||  ||| |||||  ||| ||||||||||| ||||| ||||||| |||| |    
T  37707492 aaaaactcgacccaccaaaaaccagatgccaagctca-aagacagacacggtggaatagtagtacaaatcgatccagctcgaacagaaacaaatcaaacc 37707590  T
Q  114 aagccatgaaatcaaccaccac 135  Q
    ||||||  ||||||||||||||    
T  37707591 aagccacaaaatcaaccaccac 37707612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 7546580 - 7546692
Alignment:
Q  29 caaaaaccagatgccaaattcataagacatgaacggcagaacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaa 128  Q
    ||||| ||| |||||||||||||||||||  |||||  ||||| |||||||| |||||||||||  |||| |||||||||||||| |||||   ||||||    
T  7546580 caaaacccatatgccaaattcataagacagaaacggtggaacaatagcgcaaatcgatccagctcaaacagaaacaaaccaaaac-agccacataatcaa 7546678  T
Q  129 ccaccacaagcacc 142  Q
    ||||||||||||||    
T  7546679 ccaccacaagcacc 7546692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 12129110 - 12129036
Alignment:
Q  67 gaacagtagcgcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaaccaccacaagcac 141  Q
    ||||||| |||||| || | |||||| ||||| ||||||| ||||||||||||  |  |||||||||||||||||    
T  12129110 gaacagtggcgcaaatcaaaccagctcgaacaaaaacaaatcaaaacaagccacaagctcaaccaccacaagcac 12129036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 18557422 - 18557288
Alignment:
Q  74 agcgcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaaccaccacaagcaccaccacgaacatagtgtcggcgccaccctcta 173  Q
    ||||||| ||||||||||| |||||  |||||||||| ||||||||  || ||||||||||  |||||| || ||||||   | |  ||||||||||||     
T  18557422 agcgcaaatcgatccagctcgaacaacaacaaaccaacacaagccacaaactcaaccaccaatagcaccgccccgaacaccttttaagcgccaccctctg 18557323  T
Q  174 gactattgtaccatcttgcatcgcggaggagaaaa 208  Q
    ||| | | |||| |||| | |||||||||||||||    
T  18557322 gaccactataccgtctttcttcgcggaggagaaaa 18557288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 40531116 - 40531053
Alignment:
Q  77 gcaagtcgatccagcttgaacataaacaaaccaaaacaagccatgaaatcaaccaccacaagca 140  Q
    |||| |||||||||||||||||  |||||||||| | ||||||  || ||||||||||||||||    
T  40531116 gcaaatcgatccagcttgaacaacaacaaaccaacaaaagccacaaactcaaccaccacaagca 40531053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 31180038 - 31180079
Alignment:
Q  88 cagcttgaacataaacaaaccaaaacaagccatgaaatcaacc 130  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  31180038 cagcttgaacacaaacaaac-aaaacaagccatgaaatcaacc 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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