View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_466 (Length: 225)
Name: NF9839A_low_466
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_466 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1972382 - 1972164
Alignment:
| Q |
1 |
aagcaaaggaaattttcaaaatgggaattcaaaatagaacgatagggatgtaaccacaaacctattcattattgtatatcttagaatagcaatatgaaag |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1972382 |
aagcaaaggaaatttttaaaatgggaattcaaaatagaacgatagagatgtaaccacaaacctattcattattgtatatcttagaatagcaatatgaaag |
1972283 |
T |
|
| Q |
101 |
ttgaagtcacaataaaatctttgttgtatatcatatagtgtagatggattccaatcaaaagcttcaaatcaaccaccaatgtgaaatgggaaaattacat |
200 |
Q |
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| T |
1972282 |
ttgaagtcacaataaaatctttgttg--tatcatatagtgtagatggattccaatc-aaagcttcaaatcaaccaccaatgtgaaatgggaaaattacat |
1972186 |
T |
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| Q |
201 |
tctcaagaacaatgaaacaaaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1972185 |
tctcaagaacaatgaaacaaaa |
1972164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 19963439 - 19963383
Alignment:
| Q |
166 |
aaatcaaccaccaatgtgaaatgggaaaattacattctcaagaacaatgaaacaaaa |
222 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19963439 |
aaatgaaccaccaatgtgaaatgggaaaattacattctcaagaacaatgaaacaaaa |
19963383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 19963497 - 19963451
Alignment:
| Q |
166 |
aaatcaaccaccaatgtgaaatgggaaaattacattctcaagaacaa |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19963497 |
aaatgaaccaccaatgtgaaatgggaaaattacattctcaggaacaa |
19963451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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