View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_47 (Length: 411)
Name: NF9839A_low_47
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 27915267 - 27915071
Alignment:
| Q |
19 |
tgagtactagtatatgtcggtaactggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcgagaaaaatggcaaccagaagg |
118 |
Q |
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| T |
27915267 |
tgagtactaacatatgtcggtaaatggtt--gtggttcatggtgcactttgtcagtgttcccacaatattgtaagatcgaggaaaatggcaaccagaagg |
27915170 |
T |
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| Q |
119 |
aaaataatgattgataaattatgagtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatacagtatatgttacta |
217 |
Q |
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| T |
27915169 |
aaaataatgattgataaattatgagtgaatagaaatgtatgtcaattccggcccctatatagttaaccgttttattgaattataaaatatatgttacta |
27915071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 232 - 391
Target Start/End: Complemental strand, 27914817 - 27914658
Alignment:
| Q |
232 |
aaacacacttccattgtctgtttattgagtaggggtcggaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggatacttgca |
331 |
Q |
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| T |
27914817 |
aaacacacttttattgtctgtttagagagtaggggtctgaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggaaacttgca |
27914718 |
T |
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| Q |
332 |
tgaaagagtacttgattggccacttgcagatatatatactagattcttcgcacgatccag |
391 |
Q |
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| T |
27914717 |
agaaagagtacgtgattggctacttgcagatatatatactagattcttcgcacgatccag |
27914658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 27909857 - 27909681
Alignment:
| Q |
43 |
tggttttgtggtttatggtgcactttgtcagtgttcccacaatattgtaagatcgagaaaaatggcaaccagaaggaaaataatgattgataaattatga |
142 |
Q |
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| T |
27909857 |
tggttttgtggttcatgatgcactttgtctgtgttcccacgatattgtaagatcaaggaaaatggcaatcagaagggatataatgattgataaattatga |
27909758 |
T |
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| Q |
143 |
gtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatacagtatatgttactagt |
219 |
Q |
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| T |
27909757 |
gtgaatagaaatgtatgtcaattccggcccctatatagttaaccattttattgaattataaaatatatgttactagt |
27909681 |
T |
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