View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_470 (Length: 224)
Name: NF9839A_low_470
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_470 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 25966714 - 25966927
Alignment:
| Q |
9 |
atcaaagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgag |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25966714 |
atcagagaccatgtgtatgttgtgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaactcttgagagagattcatggag |
25966813 |
T |
|
| Q |
109 |
gacgagtttaccgccgtaggcttaatgttaagggtggtcagggctgcaggggcatgggcggattttattttatggtgttgtaactgctggatactttttg |
208 |
Q |
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||||||||||| || || ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||| |
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| T |
25966814 |
gacgagtttactgctgtgggcttaatgttaagggtggccagggctgcaagggcatgggctgattttattttatggtgttgtaactgatggataccttttg |
25966913 |
T |
|
| Q |
209 |
ttttcattttaagt |
222 |
Q |
| |
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|||||||||||||| |
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| T |
25966914 |
ttttcattttaagt |
25966927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 32463095 - 32462959
Alignment:
| Q |
9 |
atcaaagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatg-agttcatttggaagaactcttgagagagattcattga |
107 |
Q |
| |
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|||| ||||||||| |||| ||||||||| |||||||||||||||||| |||||| | |||| |||||||||||||||| || |||||||| ||||| || |
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| T |
32463095 |
atcagagaccatgtctatggtgtgatgtccagtggtgtgattgcgcaaaggtctcatgaatggagttcatttggaagaagtcctgagagagtttcatgga |
32462996 |
T |
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| Q |
108 |
ggacgagtttaccgccgtaggcttaatgttaagggtg |
144 |
Q |
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| T |
32462995 |
ggacaagtttaccgccgtaggcgtgatgttgagggtg |
32462959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 27575771 - 27575570
Alignment:
| Q |
16 |
accatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgaggacgagt |
115 |
Q |
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|||||||||||| | ||||||| |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
27575771 |
accatgtgtatgctctgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaagtcttgagagaggttcatggaggacgagt |
27575672 |
T |
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| Q |
116 |
ttaccgccgtaggcttaatgttaagggtggtcagggctgcaggggcatgggcggattttattttatggtgttgtaactgctggatactttttgttttcat |
215 |
Q |
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|||||| |||||||||| |||| ||||||| ||||| ||| ||| | || |||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
27575671 |
ttaccgtcgtaggcttattgttgagggtgg-caggg--gcaagggaagggattgattttattttatggtgttgtaaccaatggatactttttattttcat |
27575575 |
T |
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| Q |
216 |
tttaa |
220 |
Q |
| |
|
||||| |
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|
| T |
27575574 |
tttaa |
27575570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 14912568 - 14912704
Alignment:
| Q |
9 |
atcaaagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgag |
108 |
Q |
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|||||||||||||| |||| |||| |||| | ||||||||||| ||||||||||||| |||||||||||||||||| | ||||| |||| || || ||| |
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| T |
14912568 |
atcaaagaccatgtctatgatgtg-tgtccaatggtgtgattgtgcaagggtctcctgaatgagttcatttggaaggagtcttggtagaggtttatggag |
14912666 |
T |
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| Q |
109 |
gacgagtttaccgccgtaggcttaatgttaagggtggt |
146 |
Q |
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| T |
14912667 |
gatgagtttaccgccgtaggcgtgatgttgtgggtggt |
14912704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 99646 - 99775
Alignment:
| Q |
16 |
accatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgaggacgagt |
115 |
Q |
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||||||| |||| || ||||| ||||||||||||| |||||||| ||| |||| || |||||||||| ||||||||||| ||||| |||||||||| |
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| T |
99646 |
accatgtttatgctggcatgtccagtggtgtgattgtgcaagggtttccccaatggattagtttggaagaagtcttgagagaggttcatggaggacgagt |
99745 |
T |
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| Q |
116 |
ttaccgccgtaggcttaatgttaagggtgg |
145 |
Q |
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|||||||| |||| || ||||| ||||||| |
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| T |
99746 |
ttaccgccataggtttgatgttgagggtgg |
99775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 99779 - 99835
Alignment:
| Q |
164 |
gggcggattttattttatggtgttgtaactgctggatactttttgttttcattttaa |
220 |
Q |
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|||| |||||||| ||||||||||||||| | |||||| ||||| |||| ||||||| |
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| T |
99779 |
gggctgattttatgttatggtgttgtaaccgttggataatttttcttttaattttaa |
99835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 54454172 - 54454106
Alignment:
| Q |
9 |
atcaaagaccatgtgtatgttgtgatgtctagtggtgtgattgcgcaagggtctcctaaatgagttc |
75 |
Q |
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|||| ||||||||| | |||||||||||| | ||||||||||||||||||||||||| |||| |||| |
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| T |
54454172 |
atcagagaccatgtctgtgttgtgatgtccattggtgtgattgcgcaagggtctcctcaatgggttc |
54454106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 11436167 - 11436275
Alignment:
| Q |
34 |
tgtctagtggtgtgattgcgcaagggtctcctaaatgagttcatttggaagaactcttgagagagattcattgaggacgagtttaccgccgtaggcttaa |
133 |
Q |
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|||| ||||||||| | |||||||||||| || ||| ||||||||||||| | || | ||||| ||||| |||| || ||||| || ||||||| | | |
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| T |
11436167 |
tgtccagtggtgtggtggcgcaagggtcttctgcatgggttcatttggaaggaatcaagggagaggttcatggagggcgggtttatcgtcgtaggcgtga |
11436266 |
T |
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| Q |
134 |
tgttaaggg |
142 |
Q |
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||||||||| |
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| T |
11436267 |
tgttaaggg |
11436275 |
T |
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